Literature DB >> 12829509

Redox-induced structural dynamics of Fe-heme ligand in myoglobin by X-ray absorption spectroscopy.

S Della Longa1, A Arcovito, M Benfatto, A Congiu-Castellano, M Girasole, J L Hazemann, A Lo Bosco.   

Abstract

The Fe(III) --> Fe(II) reduction of the heme iron in aquomet-myoglobin, induced by x-rays at cryogenics temperatures, produces a thermally trapped nonequilibrium state in which a water molecule is still bound to the iron. Water dissociates at T > 160 K, when the protein can relax toward its new equilibrium, deoxy form. Synchrotron radiation x-ray absorption spectroscopy provides information on both the redox state and the Fe-heme structure. Owing to the development of a novel method to analyze the low-energy region of x-ray absorption spectroscopy, we obtain structural pictures of this photo-inducible, irreversible process, with 0.02-0.06-A accuracy, on the protein in solution as well as in crystal. After photo-reduction, the iron-proximal histidine bond is shortened by 0.15 A, a reinforcement that should destabilize the iron in-plane position favoring water dissociation. Moreover, we are able to get the distance of the water molecule even after dissociation from the iron, with a 0.16-A statistical error.

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Year:  2003        PMID: 12829509      PMCID: PMC1303110          DOI: 10.1016/S0006-3495(03)74499-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  25 in total

1.  Protein dynamics in an intermediate state of myoglobin: optical absorption, resonance Raman spectroscopy, and x-ray structure analysis.

Authors:  N Engler; A Ostermann; A Gassmann; D C Lamb; V E Prusakov; J Schott; R Schweitzer-Stenner; F G Parak
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

2.  Geometrical fitting of experimental XANES spectra by a full multiple-scattering procedure.

Authors:  M Benfatto; S Della Longa
Journal:  J Synchrotron Radiat       Date:  2001-07-01       Impact factor: 2.616

3.  Structural changes in a cryo-cooled protein crystal owing to radiation damage.

Authors:  W P Burmeister
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-03

4.  X-ray absorption edge fine structure spectroscopy of the active site haem of cytochrome c.

Authors:  A Labhardt; C Yuen
Journal:  Nature       Date:  1979-01-11       Impact factor: 49.962

5.  Parameters controlling the kinetics of ferric and ferrous hemeproteins reduction by hydrated electrons.

Authors:  S Pin; B Hickel; B Alpert; C Ferradini
Journal:  Biochim Biophys Acta       Date:  1989-01-19

6.  X-ray absorption spectroscopy and applications in structural biology.

Authors:  V K Yachandra
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

Review 7.  X-ray absorption spectroscopy of hemoglobin.

Authors:  S Pin; B Alpert; A Congiu-Castellano; S Della Longa; A Bianconi
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

8.  Primary radiation damage of protein crystals by an intense synchrotron X-ray beam.

Authors:  T Y Teng; K Moffat
Journal:  J Synchrotron Radiat       Date:  2000-09-01       Impact factor: 2.616

9.  Structure Solution of Azurin II from Alcaligenes xylosoxidans using the Laue Method: Possibility of Studying In Situ Redox Changes using X-rays.

Authors:  M J Debenham; Q Hao; S S Hasnain; F E Dodd; Z H Abraham; R R Eady
Journal:  J Synchrotron Radiat       Date:  1996-01-01       Impact factor: 2.616

10.  X-ray absorption near edge studies of cytochrome P-450-CAM, chloroperoxidase, and myoglobin. Direct evidence for the electron releasing character of a cysteine thiolate proximal ligand.

Authors:  H I Liu; M Sono; S Kadkhodayan; L P Hager; B Hedman; K O Hodgson; J H Dawson
Journal:  J Biol Chem       Date:  1995-05-05       Impact factor: 5.157

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  12 in total

1.  A quantitative XANES analysis of the calcium high-affinity binding site of the purple membrane.

Authors:  Francesc Sepulcre; M Grazia Proietti; Maurizio Benfatto; Stefano Della Longa; Joaquin García; Esteve Padrós
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

2.  Light-induced relaxation of photolyzed carbonmonoxy myoglobin: a temperature-dependent x-ray absorption near-edge structure (XANES) study.

Authors:  A Arcovito; D C Lamb; G U Nienhaus; J L Hazemann; M Benfatto; S Della Longa
Journal:  Biophys J       Date:  2005-01-28       Impact factor: 4.033

3.  Distinct reaction pathways followed upon reduction of oxy-heme oxygenase and oxy-myoglobin as characterized by Mössbauer spectroscopy.

Authors:  Ricardo Garcia-Serres; Roman M Davydov; Toshitaka Matsui; Masao Ikeda-Saito; Brian M Hoffman; Boi Hanh Huynh
Journal:  J Am Chem Soc       Date:  2007-02-07       Impact factor: 15.419

4.  End-On Copper(I) Superoxo and Cu(II) Peroxo and Hydroperoxo Complexes Generated by Cryoreduction/Annealing and Characterized by EPR/ENDOR Spectroscopy.

Authors:  Roman Davydov; Austin E Herzog; Richard J Jodts; Kenneth D Karlin; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2022-01-04       Impact factor: 15.419

5.  Haem conformation of amphibian nytrosylhaemoglobins detected by XANES spectroscopy.

Authors:  D Pozzi; G Amiconi; A Arcovito; M Girasole; A Congiu Castellano
Journal:  Eur Phys J E Soft Matter       Date:  2005-04       Impact factor: 1.890

6.  Unusual heme iron-lipid acyl chain coordination in Escherichia coli flavohemoglobin.

Authors:  Paola D'Angelo; Debora Lucarelli; Stefano della Longa; Maurizio Benfatto; Jean Louis Hazemann; Alessandro Feis; Giulietta Smulevich; Andrea Ilari; Alessandra Bonamore; Alberto Boffi
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

7.  [Cu(aq)]2+ is structurally plastic and the axially elongated octahedron goes missing.

Authors:  Patrick Frank; Maurizio Benfatto; Munzarin Qayyum
Journal:  J Chem Phys       Date:  2018-05-28       Impact factor: 3.488

8.  EPR and ENDOR studies of Fe(II) hemoproteins reduced and oxidized at 77 K.

Authors:  Roman Davydov; Brian M Hoffman
Journal:  J Biol Inorg Chem       Date:  2007-12-06       Impact factor: 3.358

9.  High-resolution crystal structures of the solubilized domain of porcine cytochrome b5.

Authors:  Yu Hirano; Shigenobu Kimura; Taro Tamada
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-06-30

10.  Towards accurate structural characterization of metal centres in protein crystals: the structures of Ni and Cu T(6) bovine insulin derivatives.

Authors:  Christian Grundahl Frankaer; Susanne Mossin; Kenny Ståhl; Pernille Harris
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-12-24
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