Literature DB >> 15661339

Papa's got a brand new tag: advances in identification of proteases and their substrates.

Alan B Marnett1, Charles S Craik.   

Abstract

Characterization of proteolytic enzymes and their substrates presents a formidable challenge in the context of biological systems. Despite the fact that an estimated 2% of the human genome codes for proteases, only a small fraction of these enzymes have well-characterized functions. Much of the difficulty in understanding protease biology is a direct result of the complexity of regulation, localization and activation exhibited by this class of enzymes. Here, we focus on several recently developed techniques representing crucial advances toward identification of proteases and their natural substrates.

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Year:  2005        PMID: 15661339     DOI: 10.1016/j.tibtech.2004.12.010

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  11 in total

1.  Protease specificity determination by using cellular libraries of peptide substrates (CLiPS).

Authors:  Kevin T Boulware; Patrick S Daugherty
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-03       Impact factor: 11.205

Review 2.  Using specificity to strategically target proteases.

Authors:  Mark D Lim; Charles S Craik
Journal:  Bioorg Med Chem       Date:  2008-03-30       Impact factor: 3.641

3.  Highly active and selective endopeptidases with programmed substrate specificities.

Authors:  Navin Varadarajan; Sarah Rodriguez; Bum-Yeol Hwang; George Georgiou; Brent L Iverson
Journal:  Nat Chem Biol       Date:  2008-05       Impact factor: 15.040

4.  Sampling the N-terminal proteome of human blood.

Authors:  David Wildes; James A Wells
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-19       Impact factor: 11.205

5.  Surveying proteolytic processes in human cancer microenvironments by microdialysis and activity-based mass spectrometry.

Authors:  Markus Hardt; David K Lam; John C Dolan; Brian L Schmidt
Journal:  Proteomics Clin Appl       Date:  2011-12       Impact factor: 3.494

6.  Engineering of TEV protease variants by yeast ER sequestration screening (YESS) of combinatorial libraries.

Authors:  Li Yi; Mark C Gebhard; Qing Li; Joseph M Taft; George Georgiou; Brent L Iverson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-15       Impact factor: 11.205

7.  Factor Xa active site substrate specificity with substrate phage display and computational molecular modeling.

Authors:  Hung-Ju Hsu; Keng-Chang Tsai; Yi-Kun Sun; Hung-Ju Chang; Yi-Jen Huang; Hui-Ming Yu; Chun-Hung Lin; Shi-Shan Mao; An-Suei Yang
Journal:  J Biol Chem       Date:  2008-02-22       Impact factor: 5.157

Review 8.  Engineering next generation proteases.

Authors:  Mark Pogson; George Georgiou; Brent L Iverson
Journal:  Curr Opin Biotechnol       Date:  2009-08-24       Impact factor: 9.740

9.  A remodelled protease that cleaves phosphotyrosine substrates.

Authors:  Zachary A Knight; Jennifer L Garrison; Karina Chan; David S King; Kevan M Shokat
Journal:  J Am Chem Soc       Date:  2007-09-06       Impact factor: 15.419

10.  Substrate profiling of tobacco etch virus protease using a novel fluorescence-assisted whole-cell assay.

Authors:  George Kostallas; Per-Åke Löfdahl; Patrik Samuelson
Journal:  PLoS One       Date:  2011-01-18       Impact factor: 3.240

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