Literature DB >> 18434168

Using specificity to strategically target proteases.

Mark D Lim1, Charles S Craik.   

Abstract

Proteases are a family of naturally occurring enzymes in the body whose dysregulation has been implicated in numerous diseases and cancers. Their ability to selectively and catalytically turnover substrate adds both signal amplification and functionality as parameters for the detection of disease. This review will focus on the development of activity-based methodologies to characterize proteases, and in particular, the use of positional scanning, synthetic combinatorial libraries (PS-SCL's), and substrate activity screening (SAS) assays. The use of these approaches to better understand a protease's natural substrate will be discussed as well as the technologies that emerged.

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Year:  2008        PMID: 18434168      PMCID: PMC2663002          DOI: 10.1016/j.bmc.2008.03.068

Source DB:  PubMed          Journal:  Bioorg Med Chem        ISSN: 0968-0896            Impact factor:   3.641


  80 in total

Review 1.  Papa's got a brand new tag: advances in identification of proteases and their substrates.

Authors:  Alan B Marnett; Charles S Craik
Journal:  Trends Biotechnol       Date:  2005-02       Impact factor: 19.536

2.  A combinatorial approach for determining protease specificities: application to interleukin-1beta converting enzyme (ICE).

Authors:  T A Rano; T Timkey; E P Peterson; J Rotonda; D W Nicholson; J W Becker; K T Chapman; N A Thornberry
Journal:  Chem Biol       Date:  1997-02

3.  A combinatorial approach defines specificities of members of the caspase family and granzyme B. Functional relationships established for key mediators of apoptosis.

Authors:  N A Thornberry; T A Rano; E P Peterson; D M Rasper; T Timkey; M Garcia-Calvo; V M Houtzager; P A Nordstrom; S Roy; J P Vaillancourt; K T Chapman; D W Nicholson
Journal:  J Biol Chem       Date:  1997-07-18       Impact factor: 5.157

Review 4.  Structural basis of substrate specificity in the serine proteases.

Authors:  J J Perona; C S Craik
Journal:  Protein Sci       Date:  1995-03       Impact factor: 6.725

Review 5.  Cysteine proteases of malaria parasites.

Authors:  Philip J Rosenthal
Journal:  Int J Parasitol       Date:  2004-12       Impact factor: 3.981

6.  Granzyme M is a regulatory protease that inactivates proteinase inhibitor 9, an endogenous inhibitor of granzyme B.

Authors:  Sami Mahrus; Walter Kisiel; Charles S Craik
Journal:  J Biol Chem       Date:  2004-10-19       Impact factor: 5.157

7.  Profiling serine protease substrate specificity with solution phase fluorogenic peptide microarrays.

Authors:  Dhaval N Gosalia; Cleo M Salisbury; Dustin J Maly; Jonathan A Ellman; Scott L Diamond
Journal:  Proteomics       Date:  2005-04       Impact factor: 3.984

8.  Substrates of the prostate-specific serine protease prostase/KLK4 defined by positional-scanning peptide libraries.

Authors:  Masazumi Matsumura; Ami S Bhatt; Dennis Andress; Nigel Clegg; Thomas K Takayama; Charles S Craik; Peter S Nelson
Journal:  Prostate       Date:  2005-01-01       Impact factor: 4.104

9.  Novel peptidyl alpha-keto amide inhibitors of calpains and other cysteine proteases.

Authors:  Z Li; A C Ortega-Vilain; G S Patil; D L Chu; J E Foreman; D D Eveleth; J C Powers
Journal:  J Med Chem       Date:  1996-09-27       Impact factor: 7.446

10.  Defining the level of human immunodeficiency virus type 1 (HIV-1) protease activity required for HIV-1 particle maturation and infectivity.

Authors:  J R Rosé; L M Babé; C S Craik
Journal:  J Virol       Date:  1995-05       Impact factor: 5.103

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  5 in total

1.  Peptide length and leaving-group sterics influence potency of peptide phosphonate protease inhibitors.

Authors:  Christopher M Brown; Manisha Ray; Aura A Eroy-Reveles; Pascal Egea; Cheryl Tajon; Charles S Craik
Journal:  Chem Biol       Date:  2011-01-28

2.  Proteolytic Activity Matrix Analysis (PrAMA) for simultaneous determination of multiple protease activities.

Authors:  Miles A Miller; Layla Barkal; Karen Jeng; Andreas Herrlich; Marcia Moss; Linda G Griffith; Douglas A Lauffenburger
Journal:  Integr Biol (Camb)       Date:  2010-12-23       Impact factor: 2.192

3.  Design of ultrasensitive probes for human neutrophil elastase through hybrid combinatorial substrate library profiling.

Authors:  Paulina Kasperkiewicz; Marcin Poreba; Scott J Snipas; Heather Parker; Christine C Winterbourn; Guy S Salvesen; Marcin Drag
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-03       Impact factor: 11.205

4.  Macromolecular assembly-driven processing of the 2/3 cleavage site in the alphavirus replicase polyprotein.

Authors:  Aleksei Lulla; Valeria Lulla; Andres Merits
Journal:  J Virol       Date:  2011-10-26       Impact factor: 5.103

5.  HTS by NMR of combinatorial libraries: a fragment-based approach to ligand discovery.

Authors:  Bainan Wu; Ziming Zhang; Roberta Noberini; Elisa Barile; Marc Giulianotti; Clemencia Pinilla; Richard A Houghten; Elena B Pasquale; Maurizio Pellecchia
Journal:  Chem Biol       Date:  2013-01-24
  5 in total

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