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Literature DB >> 15633242

Two ancient rounds of polyploidy in rice genome.

Yang Zhang, Guo-hua Xu, Xing-yi Guo, Long-jiang Fan.

Abstract

An ancient genome duplication (PPP1) that predates divergence of the cereals has recently been recognized. We report here another potentially older large-scale duplication (PPP2) event that predates monocot-dicot divergence in the genome of rice (Oryza sativa L.), as inferred from the age distribution of pairs of duplicate genes based on recent genome data for rice. Our results suggest that paleopolyploidy was widespread and played an important role in the evolution of rice.

Entities: Disease Species

Mesh：

Year: 2005 PMID： 15633242 PMCID： PMC1389621 DOI： 10.1631/jzus.2005.B0087

Source DB: PubMed Journal: J Zhejiang Univ Sci B ISSN： 1673-1581 Impact factor: 3.066

14 in total

1. Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution.

Authors: Xun Gu; Yufeng Wang; Jianying Gu
Journal: Nat Genet Date: 2002-05-28 Impact factor: 38.330

Review 2. Structure and evolution of cereal genomes.

Authors: Andrew H Paterson; John E Bowers; Daniel G Peterson; James C Estill; Brad A Chapman
Journal: Curr Opin Genet Dev Date: 2003-12 Impact factor: 5.578

3. A comparative phylogenetic approach for dating whole genome duplication events.

Authors: Brad A Chapman; John E Bowers; Stefan R Schulze; Andrew H Paterson
Journal: Bioinformatics Date: 2004-01-22 Impact factor: 6.937

4. Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.

Authors: A H Paterson; J E Bowers; B A Chapman
Journal: Proc Natl Acad Sci U S A Date: 2004-05-25 Impact factor: 11.205

5. Molecular evidence for an ancient duplication of the entire yeast genome.

Authors: K H Wolfe; D C Shields
Journal: Nature Date: 1997-06-12 Impact factor: 49.962

6. The hidden duplication past of Arabidopsis thaliana.

Authors: Cedric Simillion; Klaas Vandepoele; Marc C E Van Montagu; Marc Zabeau; Yves Van de Peer
Journal: Proc Natl Acad Sci U S A Date: 2002-10-08 Impact factor: 11.205

7. The origins of genomic duplications in Arabidopsis.

Authors: T J Vision; D G Brown; S D Tanksley
Journal: Science Date: 2000-12-15 Impact factor: 47.728

8. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Authors: Stephen A Goff; Darrell Ricke; Tien-Hung Lan; Gernot Presting; Ronglin Wang; Molly Dunn; Jane Glazebrook; Allen Sessions; Paul Oeller; Hemant Varma; David Hadley; Don Hutchison; Chris Martin; Fumiaki Katagiri; B Markus Lange; Todd Moughamer; Yu Xia; Paul Budworth; Jingping Zhong; Trini Miguel; Uta Paszkowski; Shiping Zhang; Michelle Colbert; Wei-lin Sun; Lili Chen; Bret Cooper; Sylvia Park; Todd Charles Wood; Long Mao; Peter Quail; Rod Wing; Ralph Dean; Yeisoo Yu; Andrey Zharkikh; Richard Shen; Sudhir Sahasrabudhe; Alun Thomas; Rob Cannings; Alexander Gutin; Dmitry Pruss; Julia Reid; Sean Tavtigian; Jeff Mitchell; Glenn Eldredge; Terri Scholl; Rose Mary Miller; Satish Bhatnagar; Nils Adey; Todd Rubano; Nadeem Tusneem; Rosann Robinson; Jane Feldhaus; Teresita Macalma; Arnold Oliphant; Steven Briggs
Journal: Science Date: 2002-04-05 Impact factor: 47.728

9. Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes.

Authors: Guillaume Blanc; Kenneth H Wolfe
Journal: Plant Cell Date: 2004-06-18 Impact factor: 11.277

10. A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes.

Authors: Katica Ilic; Phillip J SanMiguel; Jeffrey L Bennetzen
Journal: Proc Natl Acad Sci U S A Date: 2003-10-06 Impact factor: 11.205

10 in total

1. Molecular phylogeny, evolution, and functional divergence of the LSD1-like gene family: inference from the rice genome.

Authors: Qingpo Liu; Qingzhong Xue
Journal: J Mol Evol Date: 2007-01-16 Impact factor: 2.395

Two ancient rounds of polyploidy in rice genome.

1. Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution.

Review 2. Structure and evolution of cereal genomes.

3. A comparative phylogenetic approach for dating whole genome duplication events.

4. Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.

5. Molecular evidence for an ancient duplication of the entire yeast genome.

6. The hidden duplication past of Arabidopsis thaliana.

7. The origins of genomic duplications in Arabidopsis.

8. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

9. Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes.

10. A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes.

1. Molecular phylogeny, evolution, and functional divergence of the LSD1-like gene family: inference from the rice genome.

2. Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication.

3. Numerous and rapid nonstochastic modifications of gene products in newly synthesized Brassica napus allotetraploids.

4. TCP transcription factors predate the emergence of land plants.

5. Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps.

6. Angiosperm genome comparisons reveal early polyploidy in the monocot lineage.

7. Origin and diversification of land plant CC-type glutaredoxins.

8. Gene count from target sequence capture places three whole genome duplication events in Hibiscus L. (Malvaceae).

Review 9. Multiple mechanisms and challenges for the application of allopolyploidy in plants.

10. Selection and mutation on microRNA target sequences during rice evolution.