Literature DB >> 14638328

Structure and evolution of cereal genomes.

Andrew H Paterson1, John E Bowers, Daniel G Peterson, James C Estill, Brad A Chapman.   

Abstract

The cereal species, of central importance to our diet, began to diverge 50-70 million years ago. For the past few thousand years, these species have undergone largely parallel selection regimes associated with domestication and improvement. The rice genome sequence provides a platform for organizing information about diverse cereals, and together with genetic maps and sequence samples from other cereals is yielding new insights into both the shared and the independent dimensions of cereal evolution. New data and population-based approaches are identifying genes that have been involved in cereal improvement. Reduced-representation sequencing promises to accelerate gene discovery in many large-genome cereals, and to better link the under-explored genomes of 'orphan' cereals with state-of-the-art knowledge.

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Year:  2003        PMID: 14638328     DOI: 10.1016/j.gde.2003.10.002

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  40 in total

1.  Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.

Authors:  A H Paterson; J E Bowers; B A Chapman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-25       Impact factor: 11.205

2.  Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.

Authors:  Chaoguang Tian; Ping Wan; Shouhong Sun; Jiayang Li; Mingsheng Chen
Journal:  Plant Mol Biol       Date:  2004-03       Impact factor: 4.076

3.  Use of chromosome walking in discovery of single-nucleotide polymorphism in noncoding regions of a candidate actin gene in Pinus radiata.

Authors:  W Li; H Li; H Wu; X-Y Chen
Journal:  J Appl Genet       Date:  2010       Impact factor: 3.240

4.  Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome.

Authors:  Fabien Chardon; Bérangère Virlon; Laurence Moreau; Matthieu Falque; Johann Joets; Laurent Decousset; Alain Murigneux; Alain Charcosset
Journal:  Genetics       Date:  2004-12       Impact factor: 4.562

5.  A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray.

Authors:  Viktor Stolc; Lei Li; Xiangfeng Wang; Xueyong Li; Ning Su; Waraporn Tongprasit; Bin Han; Yongbiao Xue; Jiayang Li; Michael Snyder; Mark Gerstein; Jun Wang; Xing Wang Deng
Journal:  Plant Mol Biol       Date:  2005-09       Impact factor: 4.076

6.  Comprehensive molecular cytogenetic analysis of sorghum genome architecture: distribution of euchromatin, heterochromatin, genes and recombination in comparison to rice.

Authors:  J-S Kim; M N Islam-Faridi; P E Klein; D M Stelly; H J Price; R R Klein; J E Mullet
Journal:  Genetics       Date:  2005-09-02       Impact factor: 4.562

7.  Extensive de Novo genomic variation in rice induced by introgression from wild rice (Zizania latifolia Griseb.).

Authors:  Yong-Ming Wang; Zhen-Ying Dong; Zhong-Juan Zhang; Xiu-Yun Lin; Ye Shen; Daowei Zhou; Bao Liu
Journal:  Genetics       Date:  2005-06-03       Impact factor: 4.562

8.  Comparative genomics of Gossypium and Arabidopsis: unraveling the consequences of both ancient and recent polyploidy.

Authors:  Junkang Rong; John E Bowers; Stefan R Schulze; Vijay N Waghmare; Carl J Rogers; Gary J Pierce; Hua Zhang; James C Estill; Andrew H Paterson
Journal:  Genome Res       Date:  2005-08-18       Impact factor: 9.043

9.  Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication.

Authors:  Brad A Chapman; John E Bowers; Frank A Feltus; Andrew H Paterson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-08       Impact factor: 11.205

10.  The fractionated orthology of Bs2 and Rx/Gpa2 supports shared synteny of disease resistance in the Solanaceae.

Authors:  Michael Mazourek; Elizabeth T Cirulli; Sarah M Collier; Laurie G Landry; Byoung-Cheorl Kang; Edmund A Quirin; James M Bradeen; Peter Moffett; Molly M Jahn
Journal:  Genetics       Date:  2009-05-27       Impact factor: 4.562

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