Literature DB >> 15613629

NMR relaxation studies on the hydrate layer of intrinsically unstructured proteins.

Mónika Bokor1, Veronika Csizmók, Dénes Kovács, Péter Bánki, Peter Friedrich, Peter Tompa, Kálmán Tompa.   

Abstract

Intrinsically unstructured/disordered proteins (IUPs) exist in a disordered and largely solvent-exposed, still functional, structural state under physiological conditions. As their function is often directly linked with structural disorder, understanding their structure-function relationship in detail is a great challenge to structural biology. In particular, their hydration and residual structure, both closely linked with their mechanism of action, require close attention. Here we demonstrate that the hydration of IUPs can be adequately approached by a technique so far unexplored with respect to IUPs, solid-state NMR relaxation measurements. This technique provides quantitative information on various features of hydrate water bound to these proteins. By freezing nonhydrate (bulk) water out, we have been able to measure free induction decays pertaining to protons of bound water from which the amount of hydrate water, its activation energy, and correlation times could be calculated. Thus, for three IUPs, the first inhibitory domain of calpastatin, microtubule-associated protein 2c, and plant dehydrin early responsive to dehydration 10, we demonstrate that they bind a significantly larger amount of water than globular proteins, whereas their suboptimal hydration and relaxation parameters are correlated with their differing modes of function. The theoretical treatment and experimental approach presented in this article may have general utility in characterizing proteins that belong to this novel structural class.

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Year:  2004        PMID: 15613629      PMCID: PMC1305255          DOI: 10.1529/biophysj.104.051912

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  Why are "natively unfolded" proteins unstructured under physiologic conditions?

Authors:  V N Uversky; J R Gillespie; A L Fink
Journal:  Proteins       Date:  2000-11-15

2.  Speeding molecular recognition by using the folding funnel: the fly-casting mechanism.

Authors:  B A Shoemaker; J J Portman; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

Review 3.  What does it mean to be natively unfolded?

Authors:  Vladimir N Uversky
Journal:  Eur J Biochem       Date:  2002-01

4.  A Raman optical activity study of rheomorphism in caseins, synucleins and tau. New insight into the structure and behaviour of natively unfolded proteins.

Authors:  Christopher D Syme; Ewan W Blanch; Carl Holt; Ross Jakes; Michel Goedert; Lutz Hecht; Laurence D Barron
Journal:  Eur J Biochem       Date:  2002-01

Review 5.  Current topics in RNA-protein recognition: control of specificity and biological function through induced fit and conformational capture.

Authors:  N Leulliot; G Varani
Journal:  Biochemistry       Date:  2001-07-10       Impact factor: 3.162

Review 6.  Natively unfolded proteins: a point where biology waits for physics.

Authors:  Vladimir N Uversky
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

Review 7.  Coupling of folding and binding for unstructured proteins.

Authors:  H Jane Dyson; Peter E Wright
Journal:  Curr Opin Struct Biol       Date:  2002-02       Impact factor: 6.809

8.  AFM force measurements on microtubule-associated proteins: the projection domain exerts a long-range repulsive force.

Authors:  R Mukhopadhyay; J H Hoh
Journal:  FEBS Lett       Date:  2001-09-21       Impact factor: 4.124

9.  Intrinsic disorder and protein function.

Authors:  A Keith Dunker; Celeste J Brown; J David Lawson; Lilia M Iakoucheva; Zoran Obradović
Journal:  Biochemistry       Date:  2002-05-28       Impact factor: 3.162

Review 10.  Intrinsically unstructured proteins.

Authors:  Peter Tompa
Journal:  Trends Biochem Sci       Date:  2002-10       Impact factor: 13.807

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  32 in total

1.  Distinct hydration properties of wild-type and familial point mutant A53T of α-synuclein associated with Parkinson's disease.

Authors:  E Hazy; M Bokor; L Kalmar; A Gelencser; P Kamasa; K-H Han; K Tompa; P Tompa
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

2.  Protein-water and protein-buffer interactions in the aqueous solution of an intrinsically unstructured plant dehydrin: NMR intensity and DSC aspects.

Authors:  P Tompa; P Bánki; M Bokor; P Kamasa; D Kovács; G Lasanda; K Tompa
Journal:  Biophys J       Date:  2006-06-23       Impact factor: 4.033

Review 3.  The continuing conundrum of the LEA proteins.

Authors:  Alan Tunnacliffe; Michael J Wise
Journal:  Naturwissenschaften       Date:  2007-05-04

4.  Interfacial water at protein surfaces: wide-line NMR and DSC characterization of hydration in ubiquitin solutions.

Authors:  Kálmán Tompa; Péter Bánki; Mónika Bokor; Pawel Kamasa; György Lasanda; Péter Tompa
Journal:  Biophys J       Date:  2009-04-08       Impact factor: 4.033

Review 5.  The enigmatic LEA proteins and other hydrophilins.

Authors:  Marina Battaglia; Yadira Olvera-Carrillo; Alejandro Garciarrubio; Francisco Campos; Alejandra A Covarrubias
Journal:  Plant Physiol       Date:  2008-09       Impact factor: 8.340

6.  Hydration dynamics in a partially denatured ensemble of the globular protein human alpha-lactalbumin investigated with molecular dynamics simulations.

Authors:  Neelanjana Sengupta; Simon Jaud; Douglas J Tobias
Journal:  Biophys J       Date:  2008-09-05       Impact factor: 4.033

7.  Expanding the proteome: disordered and alternatively folded proteins.

Authors:  H Jane Dyson
Journal:  Q Rev Biophys       Date:  2011-07-01       Impact factor: 5.318

8.  Dynamical coupling of intrinsically disordered proteins and their hydration water: comparison with folded soluble and membrane proteins.

Authors:  F-X Gallat; A Laganowsky; K Wood; F Gabel; L van Eijck; J Wuttke; M Moulin; M Härtlein; D Eisenberg; J-P Colletier; G Zaccai; M Weik
Journal:  Biophys J       Date:  2012-07-03       Impact factor: 4.033

9.  Functional characterization of selected LEA proteins from Arabidopsis thaliana in yeast and in vitro.

Authors:  Nghiem X Dang; Antoneta V Popova; Michaela Hundertmark; Dirk K Hincha
Journal:  Planta       Date:  2014-05-20       Impact factor: 4.116

10.  Chaperone activity of ERD10 and ERD14, two disordered stress-related plant proteins.

Authors:  Denes Kovacs; Eva Kalmar; Zsolt Torok; Peter Tompa
Journal:  Plant Physiol       Date:  2008-03-21       Impact factor: 8.340

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