Literature DB >> 15611782

A genome-wide scan for quantitative trait loci linked to obesity phenotypes among West Africans.

G Chen1, A A Adeyemo, T Johnson, J Zhou, A Amoah, S Owusu, J Acheampong, K Agyenim-Boateng, B A Eghan, J Oli, G Okafor, F Abbiyesuku, G M Dunston, Y Chen, F Collins, C Rotimi.   

Abstract

OBJECTIVE: To identify quantitative trait loci (QTL) for three obesity phenotypes: body mass index (BMI), fat mass (FM) and percent body fat (PBF) in West Africans with type 2 diabetes (T2DM).
DESIGN: An affected sibling pair (ASP) design, in which both siblings had T2DM. Obesity was analyzed as a quantitative trait using a variance components approach.
SUBJECTS: Sib-pairs affected with T2DM from the Africa America Diabetes Mellitus (AADM) study, comprising 321 sibling pairs and 36 half-sibling pairs. MEASUREMENTS: Weight was measured on an electronic scale to the nearest 0.1 kg, and height was measured with a stadiometer to the nearest 0.1 cm. Body composition was estimated using bioelectric impedance analysis (BIA). Genotyping was carried out at the Center for Inherited Disease Research (CIDR) with a panel of 390 trinucleotide and tetranucleotide repeats.
RESULTS: The obesity-related phenotype showing the strongest linkage evidence was PBF on chromosome 2 (LOD 3.30 at 72.6 cM, marker D2S739). Suggestive linkage to FM was found on chromosomes 2 (LOD 2.56 at 80.4 cM) and 5 (LOD 2.25 at 98 cM, marker D5S1725). The highest LOD score for BMI was 1.68 (chromosome 4, 113.8 cM). The areas of linkage for the three phenotypes showed some clustering as all three phenotypes were linked to the same regions of 2p13 and 5q14, and our study replicated linkage evidence for several regions previously reported in other studies.
CONCLUSION: We obtained evidence for several QTLs on chromosome 2, 4 and 5 to three obesity phenotypes. This study provides data on the genetics of obesity in populations that are currently under represented in the global effort directed at understanding the pathophysiology of excess adiposity in free living individuals.

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Year:  2005        PMID: 15611782     DOI: 10.1038/sj.ijo.0802873

Source DB:  PubMed          Journal:  Int J Obes (Lond)        ISSN: 0307-0565            Impact factor:   5.095


  14 in total

1.  Applying novel genome-wide linkage strategies to search for loci influencing type 2 diabetes and adult height in American Samoa.

Authors:  Karolina Aberg; Guangyun Sun; Diane Smelser; Subba Rao Indugula; Hui-Ju Tsai; Matthew S Steele; John Tuitele; Ranjan Deka; Stephen T McGarvey; Daniel E Weeks
Journal:  Hum Biol       Date:  2008-04       Impact factor: 0.553

Review 2.  African genetic diversity: implications for human demographic history, modern human origins, and complex disease mapping.

Authors:  Michael C Campbell; Sarah A Tishkoff
Journal:  Annu Rev Genomics Hum Genet       Date:  2008       Impact factor: 8.929

3.  Identification of a potential functional single nucleotide polymorphism for fatness and growth traits in the 3'-untranslated region of the PCSK1 gene in chickens.

Authors:  K Zhang; B H Cheng; L L Yang; Z P Wang; H L Zhang; S S Xu; S Z Wang; Y X Wang; H Zhang; H Li
Journal:  J Anim Sci       Date:  2017-11       Impact factor: 3.159

4.  Genome-wide analysis identifies an african-specific variant in SEMA4D associated with body mass index.

Authors:  Guanjie Chen; Ayo P Doumatey; Jie Zhou; Lin Lei; Amy R Bentley; Fasil Tekola-Ayele; Sally N Adebamowo; Jennifer L Baker; Olufemi Fasanmade; Godfrey Okafor; Benjamin Eghan; Kofi Agyenim-Boateng; Albert Amoah; Clement Adebamowo; Joseph Acheampong; Thomas Johnson; Johnnie Oli; Daniel Shriner; Adebowale A Adeyemo; Charles N Rotimi
Journal:  Obesity (Silver Spring)       Date:  2017-03-13       Impact factor: 5.002

Review 5.  Genetic studies of African populations: an overview on disease susceptibility and response to vaccines and therapeutics.

Authors:  Giorgio Sirugo; Branwen J Hennig; Adebowale A Adeyemo; Alice Matimba; Melanie J Newport; Muntaser E Ibrahim; Kelli K Ryckman; Alessandra Tacconelli; Renato Mariani-Costantini; Giuseppe Novelli; Himla Soodyall; Charles N Rotimi; Raj S Ramesar; Sarah A Tishkoff; Scott M Williams
Journal:  Hum Genet       Date:  2008-05-30       Impact factor: 4.132

Review 6.  Genetic epidemiology of type 2 diabetes and cardiovascular diseases in Africa.

Authors:  Fasil Tekola-Ayele; Adebowale A Adeyemo; Charles N Rotimi
Journal:  Prog Cardiovasc Dis       Date:  2013 Nov-Dec       Impact factor: 8.194

7.  Admixture mapping of quantitative trait loci for BMI in African Americans: evidence for loci on chromosomes 3q, 5q, and 15q.

Authors:  Analabha Basu; Hua Tang; Donna Arnett; C Charles Gu; Tom Mosley; Sharon Kardia; Amy Luke; Bamidele Tayo; Richard Cooper; Xiaofeng Zhu; Neil Risch
Journal:  Obesity (Silver Spring)       Date:  2009-02-19       Impact factor: 5.002

8.  Genome wide association study: searching for genes underlying body mass index in the Chinese.

Authors:  Fang Yang; Xiang Ding Chen; Li Jun Tan; Jie Shen; Ding You Li; Fang Zhang; Bao Yong Sha; Hong Wen Deng
Journal:  Biomed Environ Sci       Date:  2014-05       Impact factor: 3.118

9.  Using linkage analysis to identify quantitative trait loci for sleep apnea in relationship to body mass index.

Authors:  E K Larkin; S R Patel; R C Elston; C Gray-McGuire; X Zhu; S Redline
Journal:  Ann Hum Genet       Date:  2008-08-26       Impact factor: 1.670

10.  Association of variants in the PCSK1 gene with obesity in the EPIC-Norfolk study.

Authors:  Tuomas O Kilpeläinen; Sheila A Bingham; Kay-Tee Khaw; Nicholas J Wareham; Ruth J F Loos
Journal:  Hum Mol Genet       Date:  2009-06-15       Impact factor: 6.150

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