Literature DB >> 15601865

Structural and functional analysis of essential pre-mRNA splicing factor Prp19p.

Melanie D Ohi1, Craig W Vander Kooi, Joshua A Rosenberg, Liping Ren, Justin P Hirsch, Walter J Chazin, Thomas Walz, Kathleen L Gould.   

Abstract

U-box-containing Prp19p is an integral component of the Prp19p-associated complex (the nineteen complex, or NTC) that is essential for activation of the spliceosome. Prp19p makes numerous protein-protein contacts with other NTC components and is required for NTC stability. Here we show that Prp19p forms a tetramer in vitro and in vivo and we map the domain required for its oligomerization to a central tetrameric coiled-coil. Biochemical and in vivo analyses are consistent with Prp19p tetramerization providing an interaction surface for a single copy of its binding partner, Cef1p. Electron microscopy showed that the isolated Prp19p tetramer is an elongated particle consisting of four globular WD40 domains held together by a central stalk consisting of four N-terminal U-boxes and four coiled-coils. These structural and functional data provide a basis for understanding the role of Prp19p as a key architectural component of the NTC.

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Year:  2005        PMID: 15601865      PMCID: PMC538785          DOI: 10.1128/MCB.25.1.451-460.2005

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  35 in total

1.  A subset of human 35S U5 proteins, including Prp19, function prior to catalytic step 1 of splicing.

Authors:  Olga V Makarova; Evgeny M Makarov; Henning Urlaub; Cindy L Will; Marc Gentzel; Matthias Wilm; Reinhard Lührmann
Journal:  EMBO J       Date:  2004-06-03       Impact factor: 11.598

2.  U box proteins as a new family of ubiquitin-protein ligases.

Authors:  S Hatakeyama; M Yada; M Matsumoto; N Ishida; K I Nakayama
Journal:  J Biol Chem       Date:  2001-07-02       Impact factor: 5.157

3.  The Prp19p-associated complex in spliceosome activation.

Authors:  Shih-Peng Chan; Der-I Kao; Wei-Yü Tsai; Soo-Chen Cheng
Journal:  Science       Date:  2003-09-11       Impact factor: 47.728

Review 4.  The structure and function of proteins involved in mammalian pre-mRNA splicing.

Authors:  A Krämer
Journal:  Annu Rev Biochem       Date:  1996       Impact factor: 23.643

5.  Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex.

Authors:  Ning Zheng; Brenda A Schulman; Langzhou Song; Julie J Miller; Philip D Jeffrey; Ping Wang; Claire Chu; Deanna M Koepp; Stephen J Elledge; Michele Pagano; Ronald C Conaway; Joan W Conaway; J Wade Harper; Nikola P Pavletich
Journal:  Nature       Date:  2002-04-18       Impact factor: 49.962

6.  Characterization of interactions among the Cef1p-Prp19p-associated splicing complex.

Authors:  Melanie D Ohi; Kathleen L Gould
Journal:  RNA       Date:  2002-06       Impact factor: 4.942

7.  Structure of a beta-TrCP1-Skp1-beta-catenin complex: destruction motif binding and lysine specificity of the SCF(beta-TrCP1) ubiquitin ligase.

Authors:  Geng Wu; Guozhou Xu; Brenda A Schulman; Philip D Jeffrey; J Wade Harper; Nikola P Pavletich
Journal:  Mol Cell       Date:  2003-06       Impact factor: 17.970

8.  Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure.

Authors:  R D Gietz; R H Schiestl; A R Willems; R A Woods
Journal:  Yeast       Date:  1995-04-15       Impact factor: 3.239

9.  Phosphorylation at Thr167 is required for Schizosaccharomyces pombe p34cdc2 function.

Authors:  K L Gould; S Moreno; D J Owen; S Sazer; P Nurse
Journal:  EMBO J       Date:  1991-11       Impact factor: 11.598

10.  Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy.

Authors:  Melanie Ohi; Ying Li; Yifan Cheng; Thomas Walz
Journal:  Biol Proced Online       Date:  2004-03-19       Impact factor: 3.244

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  45 in total

1.  Analysis of spliceosomal proteins in Trypanosomatids reveals novel functions in mRNA processing.

Authors:  Itai Dov Tkacz; Sachin Kumar Gupta; Vadim Volkov; Mali Romano; Tomer Haham; Pawel Tulinski; Ilana Lebenthal; Shulamit Michaeli
Journal:  J Biol Chem       Date:  2010-06-30       Impact factor: 5.157

2.  The Prp19 complex and the Usp4Sart3 deubiquitinating enzyme control reversible ubiquitination at the spliceosome.

Authors:  Eun Joo Song; Shannon L Werner; Jakob Neubauer; Frank Stegmeier; Julie Aspden; Donald Rio; J Wade Harper; Stephen J Elledge; Marc W Kirschner; Michael Rape
Journal:  Genes Dev       Date:  2010-07-01       Impact factor: 11.361

3.  Molecular architecture of the human Prp19/CDC5L complex.

Authors:  Michael Grote; Elmar Wolf; Cindy L Will; Ira Lemm; Dmitry E Agafonov; Adrian Schomburg; Wolfgang Fischle; Henning Urlaub; Reinhard Lührmann
Journal:  Mol Cell Biol       Date:  2010-02-22       Impact factor: 4.272

4.  The Prp19 U-box crystal structure suggests a common dimeric architecture for a class of oligomeric E3 ubiquitin ligases.

Authors:  Craig W Vander Kooi; Melanie D Ohi; Joshua A Rosenberg; Michael L Oldham; Marcia E Newcomer; Kathleen L Gould; Walter J Chazin
Journal:  Biochemistry       Date:  2006-01-10       Impact factor: 3.162

5.  The Prp19/Pso4 core complex undergoes ubiquitylation and structural alterations in response to DNA damage.

Authors:  Xiaoyan Lu; Randy J Legerski
Journal:  Biochem Biophys Res Commun       Date:  2007-01-26       Impact factor: 3.575

6.  Engineering a ubiquitin ligase reveals conformational flexibility required for ubiquitin transfer.

Authors:  Shu-Bing Qian; Lauren Waldron; Neelima Choudhary; Rachel E Klevit; Walter J Chazin; Cam Patterson
Journal:  J Biol Chem       Date:  2009-07-31       Impact factor: 5.157

Review 7.  Detailed close-ups and the big picture of spliceosomes.

Authors:  Melissa S Jurica
Journal:  Curr Opin Struct Biol       Date:  2008-06-10       Impact factor: 6.809

8.  Structural and functional characterization of the monomeric U-box domain from E4B.

Authors:  Kyle A Nordquist; Yoana N Dimitrova; Peter S Brzovic; Whitney B Ridenour; Kim A Munro; Sarah E Soss; Richard M Caprioli; Rachel E Klevit; Walter J Chazin
Journal:  Biochemistry       Date:  2010-01-19       Impact factor: 3.162

Review 9.  Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches.

Authors:  Mo Chen; James L Manley
Journal:  Nat Rev Mol Cell Biol       Date:  2009-09-23       Impact factor: 94.444

10.  BCAS2 is essential for Drosophila viability and functions in pre-mRNA splicing.

Authors:  Po-Han Chen; Chia-I Lee; Yu-Tzu Weng; Woan-Yuh Tarn; Yeou-Ping Tsao; Ping-Chang Kuo; Pang-Hung Hsu; Chu-Wei Huang; Chiun-Sheng Huang; Hsiu-Hsiang Lee; June-Tai Wu; Show-Li Chen
Journal:  RNA       Date:  2012-12-17       Impact factor: 4.942

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