Literature DB >> 18550358

Detailed close-ups and the big picture of spliceosomes.

Melissa S Jurica1.   

Abstract

The spliceosome is the huge macromolecular assembly responsible for the removal of introns from pre-mRNA transcripts. The size and complexity of this dynamic cellular machine dictate that structural analysis of the spliceosome is best served by a combination of techniques. Electron microscopy is providing a more global, albeit less detailed, view of spliceosome assemblies. X-ray crystallographers and NMR spectroscopists are steadily reporting more atomic resolution structures of individual spliceosome components and fragments. Increasingly, structures of these individual pieces in complex with binding partners are yielding insights into the interfaces that hold the entire spliceosome assembly together. Although the information arising from the various structural studies of splicing machinery has not yet fully converged into a complete model, we can expect that a detailed understanding of spliceosome structure will arise at the juncture of structural and computational modeling methods.

Mesh:

Year:  2008        PMID: 18550358      PMCID: PMC2474778          DOI: 10.1016/j.sbi.2008.05.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  42 in total

1.  Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions.

Authors:  Jochen Deckert; Klaus Hartmuth; Daniel Boehringer; Nastaran Behzadnia; Cindy L Will; Berthold Kastner; Holger Stark; Henning Urlaub; Reinhard Lührmann
Journal:  Mol Cell Biol       Date:  2006-07       Impact factor: 4.272

2.  The three-dimensional arcitecture of the EJC core.

Authors:  M Elizabeth Stroupe; Thomas Ø Tange; Dennis R Thomas; Melissa J Moore; Nikolaus Grigorieff
Journal:  J Mol Biol       Date:  2006-06-05       Impact factor: 5.469

Review 3.  Cryo-electron microscopy of spliceosomal components.

Authors:  Holger Stark; Reinhard Lührmann
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

4.  Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP.

Authors:  Kanako Kuwasako; Fahu He; Makoto Inoue; Akiko Tanaka; Sumio Sugano; Peter Güntert; Yutaka Muto; Shigeyuki Yokoyama
Journal:  Structure       Date:  2006-11       Impact factor: 5.006

5.  Organization of core spliceosomal components U5 snRNA loop I and U4/U6 Di-snRNP within U4/U6.U5 Tri-snRNP as revealed by electron cryomicroscopy.

Authors:  Bjoern Sander; Monika M Golas; Evgeny M Makarov; Hero Brahms; Berthold Kastner; Reinhard Lührmann; Holger Stark
Journal:  Mol Cell       Date:  2006-10-20       Impact factor: 17.970

6.  Structural basis for polypyrimidine tract recognition by the essential pre-mRNA splicing factor U2AF65.

Authors:  E Allen Sickmier; Katherine E Frato; Haihong Shen; Shanthi R Paranawithana; Michael R Green; Clara L Kielkopf
Journal:  Mol Cell       Date:  2006-07-07       Impact factor: 17.970

7.  Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA.

Authors:  Christian B F Andersen; Lionel Ballut; Jesper S Johansen; Hala Chamieh; Klaus H Nielsen; Cristiano L P Oliveira; Jan Skov Pedersen; Bertrand Séraphin; Hervé Le Hir; Gregers Rom Andersen
Journal:  Science       Date:  2006-08-24       Impact factor: 47.728

8.  Alternative conformations at the RNA-binding surface of the N-terminal U2AF(65) RNA recognition motif.

Authors:  Karen R Thickman; E Allen Sickmier; Clara L Kielkopf
Journal:  J Mol Biol       Date:  2006-12-02       Impact factor: 5.469

9.  The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA.

Authors:  Fulvia Bono; Judith Ebert; Esben Lorentzen; Elena Conti
Journal:  Cell       Date:  2006-08-25       Impact factor: 41.582

10.  Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8.

Authors:  Yann Hargous; Guillaume M Hautbergue; Aura M Tintaru; Lenka Skrisovska; Alexander P Golovanov; James Stevenin; Lu-Yun Lian; Stuart A Wilson; Frédéric H-T Allain
Journal:  EMBO J       Date:  2006-10-12       Impact factor: 11.598

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  8 in total

1.  Site-specific platinum(II) cross-linking in a ribozyme active site.

Authors:  Erich G Chapman; Victoria J DeRose
Journal:  J Am Chem Soc       Date:  2011-12-14       Impact factor: 15.419

2.  The spliceosomal proteins PPIH and PRPF4 exhibit bi-partite binding.

Authors:  Caroline Rajiv; S RaElle Jackson; Simon Cocklin; Elan Z Eisenmesser; Tara L Davis
Journal:  Biochem J       Date:  2017-10-25       Impact factor: 3.857

Review 3.  Alternative splicing in multiple sclerosis and other autoimmune diseases.

Authors:  Irina Evsyukova; Jason A Somarelli; Simon G Gregory; Mariano A Garcia-Blanco
Journal:  RNA Biol       Date:  2010-07-01       Impact factor: 4.652

4.  The role of exon sequences in C complex spliceosome structure.

Authors:  Janine Ilagan; Patrick Yuh; Robert J Chalkley; A L Burlingame; Melissa S Jurica
Journal:  J Mol Biol       Date:  2009-09-15       Impact factor: 5.469

5.  Nuclear protein kinase CLK1 uses a non-traditional docking mechanism to select physiological substrates.

Authors:  Malik M Keshwani; Kendra L Hailey; Brandon E Aubol; Laurent Fattet; Maria L McGlone; Patricia A Jennings; Joseph A Adams
Journal:  Biochem J       Date:  2015-10-06       Impact factor: 3.857

Review 6.  Structural and Functional Insights into Human Nuclear Cyclophilins.

Authors:  Caroline Rajiv; Tara L Davis
Journal:  Biomolecules       Date:  2018-12-04

7.  Structural bioinformatics of the human spliceosomal proteome.

Authors:  Iga Korneta; Marcin Magnus; Janusz M Bujnicki
Journal:  Nucleic Acids Res       Date:  2012-05-09       Impact factor: 16.971

Review 8.  Bioinformatics Tools and Benchmarks for Computational Docking and 3D Structure Prediction of RNA-Protein Complexes.

Authors:  Chandran Nithin; Pritha Ghosh; Janusz M Bujnicki
Journal:  Genes (Basel)       Date:  2018-08-25       Impact factor: 4.096

  8 in total

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