Literature DB >> 15596473

The origin, evolution and proposed stabilization of the terms 'genome size' and 'C-value' to describe nuclear DNA contents.

Johann Greilhuber1, Jaroslav Dolezel, Martin A Lysák, Michael D Bennett.   

Abstract

BACKGROUND: Perusing the literature on nuclear 'genome size' shows that the term is not stabilized, but applied with different meanings. It is used for the DNA content of the complete chromosome complement (with chromosome number n), for which others use 'C-value', but also for the DNA content of the monoploid chromosome set only (with chromosome number x). Reconsideration of the terminology is required. AIM: Our purpose is to discuss the currently unstable usage of the terms 'genome size' and 'C-value', and to propose a new unified terminology which can describe nuclear DNA contents with ease and without ambiguity. PROPOSALS: We argue that there is a need to maintain the term genome size in a broad sense as a covering term, because it is widely understood, short and phonetically pleasing. Proposals are made for a unified and consensual terminology. In this, 'genome size' should mean the DNA content based on chromosome number x and n, and should be used mainly in a general sense. The necessary distinction of the kinds of genome sizes is made by the adjectives 'monoploid' and the neology 'holoploid'. 'Holoploid genome size' is a shortcut for the DNA content of the whole chromosome complement characteristic for the individual (and by generalization for the population, species, etc.) irrespective of the degree of generative polyploidy, aneuploidies, etc. This term was lacking in the terminology and is for reasons of linguistic consistency indispensable. The abbreviated terms for monoploid and holoploid genome size are, respectively, Cx-value and C-value. Quantitative data on genome size should always indicate the C-level by a numerical prefix, such as 1C, 1Cx, 2C, etc. The proposed conventions cover general fundamental aspects relating to genome size in plants and animals, but do not treat in detail cytogenetic particularities (e.g. haploids, hybrids, etc.) which will need minor extensions of the present scheme in a future paper.

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Year:  2005        PMID: 15596473      PMCID: PMC4246724          DOI: 10.1093/aob/mci019

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  12 in total

1.  Evolutionary implications of the relationship between genome size and body size in flatworms and copepods.

Authors:  T R Gregory; P D Hebert; J Kolasa
Journal:  Heredity (Edinb)       Date:  2000-02       Impact factor: 3.821

Review 2.  The modulation of DNA content: proximate causes and ultimate consequences.

Authors:  T R Gregory; P D Hebert
Journal:  Genome Res       Date:  1999-04       Impact factor: 9.043

3.  A bird's-eye view of the C-value enigma: genome size, cell size, and metabolic rate in the class aves.

Authors:  T Ryan Gregory
Journal:  Evolution       Date:  2002-01       Impact factor: 3.694

4.  The desoxyribose nucleic acid content of animal nuclei.

Authors:  H H SWIFT
Journal:  Physiol Zool       Date:  1950-07

Review 5.  Plant genome size research: a field in focus.

Authors:  M D Bennett; I J Leitch
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

6.  The constancy of desoxyribose nucleic acid in plant nuclei.

Authors:  H SWIFT
Journal:  Proc Natl Acad Sci U S A       Date:  1950-11       Impact factor: 11.205

7.  Evolution of genome size in Brassicaceae.

Authors:  J Spencer Johnston; Alan E Pepper; Anne E Hall; Z Jeffrey Chen; George Hodnett; Janice Drabek; Rebecca Lopez; H James Price
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

8.  Evolution of DNA amounts across land plants (embryophyta).

Authors:  I J Leitch; D E Soltis; P S Soltis; M D Bennett
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

Review 9.  A cytometric exercise in plant DNA histograms, with 2C values for 70 species.

Authors:  D Marie; S C Brown
Journal:  Biol Cell       Date:  1993       Impact factor: 4.458

10.  Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb.

Authors:  Michael D Bennett; Ilia J Leitch; H James Price; J Spencer Johnston
Journal:  Ann Bot       Date:  2003-04       Impact factor: 4.357

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  141 in total

Review 1.  The more the better? The role of polyploidy in facilitating plant invasions.

Authors:  Mariska te Beest; Johannes J Le Roux; David M Richardson; Anne K Brysting; Jan Suda; Magdalena Kubesová; Petr Pysek
Journal:  Ann Bot       Date:  2011-10-31       Impact factor: 4.357

2.  Genome size and DNA base composition of geophytes: the mirror of phenology and ecology?

Authors:  Pavel Veselý; Petr Bures; Petr Smarda; Tomás Pavlícek
Journal:  Ann Bot       Date:  2011-10-21       Impact factor: 4.357

Review 3.  Exploring giant plant genomes with next-generation sequencing technology.

Authors:  Laura J Kelly; Ilia J Leitch
Journal:  Chromosome Res       Date:  2011-10       Impact factor: 5.239

4.  Ecological effects of cell-level processes: genome size, functional traits and regional abundance of herbaceous plant species.

Authors:  Tomás Herben; Jan Suda; Jitka Klimesová; Stanislav Mihulka; Pavel Ríha; Irena Símová
Journal:  Ann Bot       Date:  2012-05-23       Impact factor: 4.357

5.  Reticulate evolution and taxonomic concepts in the Ranunculus auricomus complex (Ranunculaceae): insights from analysis of morphological, karyological and molecular data.

Authors:  Elvira Hörandl; Johann Greilhuber; Katarina Klímová; Ovidiu Paun; Eva Temsch; Khatere Emadzade; Iva Hodálová
Journal:  Taxon       Date:  2009-11       Impact factor: 2.338

6.  Nuclear DNA variation, chromosome numbers and polyploidy in the endemic and indigenous grass flora of New Zealand.

Authors:  B G Murray; P J De Lange; A R Ferguson
Journal:  Ann Bot       Date:  2005-10-21       Impact factor: 4.357

Review 7.  Plant DNA flow cytometry and estimation of nuclear genome size.

Authors:  Jaroslav Dolezel; Jan Bartos
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

Review 8.  Plant genome size research: a field in focus.

Authors:  M D Bennett; I J Leitch
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

9.  First nuclear DNA C-values for 18 eudicot families.

Authors:  Lynda Hanson; Amy Boyd; Margaret A T Johnson; Michael D Bennett
Journal:  Ann Bot       Date:  2005-10-20       Impact factor: 4.357

10.  Genome size variation in the genus Carthamus (Asteraceae, Cardueae): systematic implications and additive changes during allopolyploidization.

Authors:  Teresa Garnatje; Sònia Garcia; Roser Vilatersana; Joan Vallès
Journal:  Ann Bot       Date:  2006-01-03       Impact factor: 4.357

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