Literature DB >> 15593410

E-Cell 2: multi-platform E-Cell simulation system.

K Takahashi1, N Ishikawa, Y Sadamoto, H Sasamoto, S Ohta, A Shiozawa, F Miyoshi, Y Naito, Y Nakayama, M Tomita.   

Abstract

A new version of the E-Cell simulation system,which runs on Windows as well as Linux, has been released as free software under the terms of the GNU General Public License.

Entities:  

Mesh：

Year:  2003        PMID： 15593410     DOI： 10.1093/bioinformatics/btg221

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  33 in total

Review 1.  Systems biology in immunology: a computational modeling perspective.

Authors:  Ronald N Germain; Martin Meier-Schellersheim; Aleksandra Nita-Lazar; Iain D C Fraser
Journal:  Annu Rev Immunol       Date:  2011       Impact factor: 28.527

Review 2.  Systems biology of pro-angiogenic therapies targeting the VEGF system.

Authors:  Feilim Mac Gabhann; Amina A Qutub; Brian H Annex; Aleksander S Popel
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010 Nov-Dec

Review 3.  Understanding diseases by mouse click: the promise and potential of computational approaches in Systems Biology.

Authors:  F Klauschen; B R Angermann; M Meier-Schellersheim
Journal:  Clin Exp Immunol       Date:  2007-07-30       Impact factor: 4.330

Review 4.  Intelligently deciphering unintelligible designs: algorithmic algebraic model checking in systems biology.

Authors:  Bud Mishra
Journal:  J R Soc Interface       Date:  2009-04-08       Impact factor: 4.118

5.  Model aggregation: a building-block approach to creating large macromolecular regulatory networks.

Authors:  Ranjit Randhawa; Clifford A Shaffer; John J Tyson
Journal:  Bioinformatics       Date:  2009-10-29       Impact factor: 6.937

6.  Model composition for macromolecular regulatory networks.

Authors:  Ranjit Randhawa; Clifford A Shaffer; John J Tyson
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2010 Apr-Jun       Impact factor: 3.710

7.  Perspective: On the importance of hydrodynamic interactions in the subcellular dynamics of macromolecules.

Authors:  Jeffrey Skolnick
Journal:  J Chem Phys       Date:  2016-09-14       Impact factor: 3.488

Review 8.  Quantitative computational models of molecular self-assembly in systems biology.

Authors:  Marcus Thomas; Russell Schwartz
Journal:  Phys Biol       Date:  2017-05-23       Impact factor: 2.583

Review 9.  Kinetic modeling of biological systems.

Authors:  Haluk Resat; Linda Petzold; Michel F Pettigrew
Journal:  Methods Mol Biol       Date:  2009

10.  Simulation of E. coli gene regulation including overlapping cell cycles, growth, division, time delays and noise.

Authors:  Ruoyu Luo; Lin Ye; Chenyang Tao; Kankan Wang
Journal:  PLoS One       Date:  2013-04-26       Impact factor: 3.240
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