Literature DB >> 15578951

Progress in thioaptamer development.

Xianbin Yang1, David G Gorenstein.   

Abstract

Thioaptamers are thiophosphate ester modified nucleic acids that are isolated via in vitro or bead-based thioaptamer selection against a target molecule such as a protein. Thioaptamers offer advantages over traditional aptamers in their enhanced affinity and specificity and higher stability, largely due to the properties of the sulfur backbone-modifications. An in vitro thioaptamer selection procedure that simultaneously selects for sequence and optimized hybrid phosphoromonothioate or phosphate backbone substitutions is outlined. A novel bead-based thioaptamer selection protocol that can produce mixed phosphorodithioate, phosphoromonothioate or phosphate hybrid backbones is also described. Several examples of thioaptamers targeting specific protein are provided. Such thioaptamers are shown to modulate protein activity in vivo.

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Year:  2004        PMID: 15578951     DOI: 10.2174/1389450043345074

Source DB:  PubMed          Journal:  Curr Drug Targets        ISSN: 1389-4501            Impact factor:   3.465


  19 in total

Review 1.  The Toolbox for Modified Aptamers.

Authors:  Sergey A Lapa; Alexander V Chudinov; Edward N Timofeev
Journal:  Mol Biotechnol       Date:  2016-02       Impact factor: 2.695

2.  Strategies for the discovery of therapeutic aptamers.

Authors:  Xianbin Yang; Na Li; David G Gorenstein
Journal:  Expert Opin Drug Discov       Date:  2011-01       Impact factor: 6.098

3.  Selection of PD1/PD-L1 X-Aptamers.

Authors:  Hongyu Wang; Curtis H Lam; Xin Li; Derek L West; Xianbin Yang
Journal:  Biochimie       Date:  2017-09-11       Impact factor: 4.079

4.  Combinatorial selection, inhibition, and antiviral activity of DNA thioaptamers targeting the RNase H domain of HIV-1 reverse transcriptase.

Authors:  Anoma Somasunderam; Monique R Ferguson; Daniel R Rojo; Varatharasa Thiviyanathan; Xin Li; William A O'Brien; David G Gorenstein
Journal:  Biochemistry       Date:  2005-08-02       Impact factor: 3.162

5.  Solid-Phase Synthesis of RNA Analogs Containing Phosphorodithioate Linkages.

Authors:  Xianbin Yang
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2017-09-18

6.  Crystal structures of thrombin in complex with chemically modified thrombin DNA aptamers reveal the origins of enhanced affinity.

Authors:  Rafal Dolot; Curtis H Lam; Malgorzata Sierant; Qiang Zhao; Feng-Wu Liu; Barbara Nawrot; Martin Egli; Xianbin Yang
Journal:  Nucleic Acids Res       Date:  2018-05-18       Impact factor: 16.971

7.  Combinatorial selection of DNA thioaptamers targeted to the HA binding domain of human CD44.

Authors:  Anoma Somasunderam; Varatharasa Thiviyanathan; Takemi Tanaka; Xin Li; Muniasamy Neerathilingam; Ganesh Lakshmana Rao Lokesh; Aman Mann; Yang Peng; Mauro Ferrari; Jim Klostergaard; David G Gorenstein
Journal:  Biochemistry       Date:  2010-10-26       Impact factor: 3.162

Review 8.  Aptamers and the next generation of diagnostic reagents.

Authors:  Varatharasa Thiviyanathan; David G Gorenstein
Journal:  Proteomics Clin Appl       Date:  2012-12       Impact factor: 3.494

9.  Identification of thioaptamer ligand against E-selectin: potential application for inflamed vasculature targeting.

Authors:  Aman P Mann; Anoma Somasunderam; René Nieves-Alicea; Xin Li; Austin Hu; Anil K Sood; Mauro Ferrari; David G Gorenstein; Takemi Tanaka
Journal:  PLoS One       Date:  2010-09-30       Impact factor: 3.240

10.  Combinatorial selection of a single stranded DNA thioaptamer targeting TGF-beta1 protein.

Authors:  Jonghoon Kang; Myung Soog Lee; John A Copland; Bruce A Luxon; David G Gorenstein
Journal:  Bioorg Med Chem Lett       Date:  2008-02-13       Impact factor: 2.823

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