Literature DB >> 21359096

Strategies for the discovery of therapeutic aptamers.

Xianbin Yang1, Na Li, David G Gorenstein.   

Abstract

IMPORTANCE OF THE FIELD: Therapeutic aptamers are synthetic, structured oligonucleotides that bind to a very broad range of targets with high affinity and specificity. They are an emerging class of targeting ligand that show great promise for treating a number of diseases. A series of aptamers currently in various stages of clinical development highlights the potential of aptamers for therapeutic applications. AREAS COVERED IN THIS REVIEW: This review covers in vitro selection of oligonucleotide ligands, called aptamers, from a combinatorial library using the Systematic Evolution of Ligands by Exponential Enrichment process as well as the other known strategies for finding aptamers against various targets. WHAT THE READER WILL GAIN: Readers will gain an understanding of the highly useful strategies for successful aptamer discovery. They may also be able to combine two or more of the presented strategies for their aptamer discovery projects. TAKE HOME MESSAGE: Although many processes are available for discovering aptamers, it is not easy to discover an aptamer candidate that is ready to move toward pharmaceutical drug development. It is also apparent that there have been relatively few therapeutic advances and clinical trials undertaken due to the small number of companies that participate in aptamer development.

Entities:  

Keywords:  SELEX; aptamers; in vitro selection; oligonucleotide phosphorodithioate; thioaptamer

Year:  2011        PMID: 21359096      PMCID: PMC3045091          DOI: 10.1517/17460441.2011.537321

Source DB:  PubMed          Journal:  Expert Opin Drug Discov        ISSN: 1746-0441            Impact factor:   6.098


  97 in total

1.  Nucleic Acid Selection and the Challenge of Combinatorial Chemistry.

Authors:  Scott E. Osborne; Andrew D. Ellington
Journal:  Chem Rev       Date:  1997-04-01       Impact factor: 60.622

2.  Automated selection of aptamers against protein targets translated in vitro: from gene to aptamer.

Authors:  J Colin Cox; Andrew Hayhurst; Jay Hesselberth; Travis S Bayer; George Georgiou; Andrew D Ellington
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971

3.  Construction and selection of bead-bound combinatorial oligonucleoside phosphorothioate and phosphorodithioate aptamer libraries designed for rapid PCR-based sequencing.

Authors:  Xianbin Yang; Suzanne E Bassett; Xin Li; Bruce A Luxon; Norbert K Herzog; Robert E Shope; Judy Aronson; Tarl W Prow; James F Leary; Romy Kirby; Andrew D Ellington; David G Gorenstein
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

4.  Towards the selection of phosphorothioate aptamers optimizing in vitro selection steps with phosphorothioate nucleotides.

Authors:  M L Andreola; C Calmels; J Michel; J J Toulmé; S Litvak
Journal:  Eur J Biochem       Date:  2000-08

5.  Nonequilibrium capillary electrophoresis of equilibrium mixtures: a universal tool for development of aptamers.

Authors:  Maxim Berezovski; Andrei Drabovich; Svetlana M Krylova; Michael Musheev; Victor Okhonin; Alexander Petrov; Sergey N Krylov
Journal:  J Am Chem Soc       Date:  2005-03-09       Impact factor: 15.419

6.  In vitro selection of DNA aptamers to anthrax spores with electrochemiluminescence detection.

Authors:  J G Bruno; J L Kiel
Journal:  Biosens Bioelectron       Date:  1999-05-31       Impact factor: 10.618

7.  Using in vitro selection to direct the covalent attachment of human immunodeficiency virus type 1 Rev protein to high-affinity RNA ligands.

Authors:  K B Jensen; B L Atkinson; M C Willis; T H Koch; L Gold
Journal:  Proc Natl Acad Sci U S A       Date:  1995-12-19       Impact factor: 11.205

8.  Identification and characterization of nuclease-stabilized RNA molecules that bind human prostate cancer cells via the prostate-specific membrane antigen.

Authors:  Shawn E Lupold; Brian J Hicke; Yun Lin; Donald S Coffey
Journal:  Cancer Res       Date:  2002-07-15       Impact factor: 12.701

9.  In vivo properties of an anti-GnRH Spiegelmer: an example of an oligonucleotide-based therapeutic substance class.

Authors:  Britta Wlotzka; Susanne Leva; Bernd Eschgfäller; Jens Burmeister; Frank Kleinjung; Christine Kaduk; Peter Muhn; Holger Hess-Stumpp; Sven Klussmann
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-17       Impact factor: 11.205

10.  Selection of DNA aptamers using atomic force microscopy.

Authors:  Yusuke Miyachi; Nobuaki Shimizu; Chiaki Ogino; Akihiko Kondo
Journal:  Nucleic Acids Res       Date:  2009-12-02       Impact factor: 16.971

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  13 in total

1.  Selection of PD1/PD-L1 X-Aptamers.

Authors:  Hongyu Wang; Curtis H Lam; Xin Li; Derek L West; Xianbin Yang
Journal:  Biochimie       Date:  2017-09-11       Impact factor: 4.079

2.  X-aptamers: a bead-based selection method for random incorporation of druglike moieties onto next-generation aptamers for enhanced binding.

Authors:  Weiguo He; Miguel-Angel Elizondo-Riojas; Xin Li; Ganesh Lakshmana Rao Lokesh; Anoma Somasunderam; Varatharasa Thiviyanathan; David E Volk; Ross H Durland; Johnnie Englehardt; Claudio N Cavasotto; David G Gorenstein
Journal:  Biochemistry       Date:  2012-10-11       Impact factor: 3.162

3.  Solid-Phase Synthesis of RNA Analogs Containing Phosphorodithioate Linkages.

Authors:  Xianbin Yang
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2017-09-18

4.  Crystal structures of thrombin in complex with chemically modified thrombin DNA aptamers reveal the origins of enhanced affinity.

Authors:  Rafal Dolot; Curtis H Lam; Malgorzata Sierant; Qiang Zhao; Feng-Wu Liu; Barbara Nawrot; Martin Egli; Xianbin Yang
Journal:  Nucleic Acids Res       Date:  2018-05-18       Impact factor: 16.971

5.  Organ-targeted high-throughput in vivo biologics screen identifies materials for RNA delivery.

Authors:  Tsung-Yao Chang; Peng Shi; Joseph D Steinmeyer; Itthi Chatnuntawech; Paul Tillberg; Kevin T Love; Peter M Eimon; Daniel G Anderson; Mehmet Fatih Yanik
Journal:  Integr Biol (Camb)       Date:  2014-09-03       Impact factor: 2.192

Review 6.  Aptamers and the next generation of diagnostic reagents.

Authors:  Varatharasa Thiviyanathan; David G Gorenstein
Journal:  Proteomics Clin Appl       Date:  2012-12       Impact factor: 3.494

7.  In vitro selection of DNA aptamers against human osteosarcoma.

Authors:  Khaliunsarnai Tsogtbaatar; Diana A Sousa; Debora Ferreira; Atakan Tevlek; Halil Murat Aydın; Eda Çelik; Ligia Rodrigues
Journal:  Invest New Drugs       Date:  2021-08-12       Impact factor: 3.850

Review 8.  Chimeric aptamers in cancer cell-targeted drug delivery.

Authors:  Jagat R Kanwar; Kislay Roy; Rupinder K Kanwar
Journal:  Crit Rev Biochem Mol Biol       Date:  2011-09-28       Impact factor: 8.250

9.  X-aptamers targeting Thy-1 membrane glycoprotein in pancreatic ductal adenocarcinoma.

Authors:  Hongyu Wang; Xin Li; Lisa A Lai; Teresa A Brentnall; David W Dawson; Kimberly A Kelly; Ru Chen; Sheng Pan
Journal:  Biochimie       Date:  2020-11-23       Impact factor: 4.079

10.  Evoking picomolar binding in RNA by a single phosphorodithioate linkage.

Authors:  N Dinuka Abeydeera; Martin Egli; Nehemiah Cox; Karen Mercier; Jonas Nascimento Conde; Pradeep S Pallan; Daniella M Mizurini; Malgorzata Sierant; Fatima-Ezzahra Hibti; Tom Hassell; Tianzhi Wang; Feng-Wu Liu; Hong-Min Liu; Carlos Martinez; Anil K Sood; Terry P Lybrand; Chiraz Frydman; Robson Q Monteiro; Richard H Gomer; Barbara Nawrot; Xianbin Yang
Journal:  Nucleic Acids Res       Date:  2016-08-26       Impact factor: 16.971

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