Literature DB >> 15563591

Glycine as a D-amino acid surrogate in the K(+)-selectivity filter.

Francis I Valiyaveetil1, Matthew Sekedat, Roderick Mackinnon, Tom W Muir.   

Abstract

The K(+) channel-selectivity filter consists of two absolutely conserved glycine residues. Crystal structures show that the first glycine in the selectivity filter, Gly-77 in KcsA, is in a left-handed helical conformation. Although the left-handed helical conformation is not favorable for the naturally occurring L-amino acids, it is favorable for the chirally opposite D-amino acids. Here, we demonstrate that Gly-77 can be replaced by D-Ala with almost complete retention of function. In contrast, substitution with an L-amino acid results in a nonfunctional channel. This finding suggests that glycine is used as a surrogate D-amino acid in the selectivity filter. The absolute conservation of glycine in the K(+)-selectivity filter can be explained as a result of glycine being the only natural amino acid that can play this role.

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Year:  2004        PMID: 15563591      PMCID: PMC535378          DOI: 10.1073/pnas.0407820101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  The conformations of polypeptide chains where the main-chain parts of successive residues are enantiomeric. Their occurrence in cation and anion-binding regions of proteins.

Authors:  James D Watson; E James Milner-White
Journal:  J Mol Biol       Date:  2002-01-11       Impact factor: 5.469

2.  Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution.

Authors:  Y Zhou; J H Morais-Cabral; A Kaufman; R MacKinnon
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

3.  Conformations of amino acids in proteins.

Authors:  Sven Hovmöller; Tuping Zhou; Tomas Ohlson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-04-26

Review 4.  Semisynthesis of proteins by expressed protein ligation.

Authors:  Tom W Muir
Journal:  Annu Rev Biochem       Date:  2003-02-27       Impact factor: 23.643

5.  Sequence-function analysis of the K+-selective family of ion channels using a comprehensive alignment and the KcsA channel structure.

Authors:  Robin T Shealy; Anuradha D Murphy; Rampriya Ramarathnam; Eric Jakobsson; Shankar Subramaniam
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

6.  Pore mutations affecting tetrameric assembly and functioning of the potassium channel KcsA from Streptomyces lividans.

Authors:  H Splitt; D Meuser; I Borovok; M Betzler; H Schrempf
Journal:  FEBS Lett       Date:  2000-04-21       Impact factor: 4.124

7.  Semisynthesis and folding of the potassium channel KcsA.

Authors:  Francis I Valiyaveetil; Roderick MacKinnon; Tom W Muir
Journal:  J Am Chem Soc       Date:  2002-08-07       Impact factor: 15.419

8.  Enhanced D-amino acid incorporation into protein by modified ribosomes.

Authors:  Larisa M Dedkova; Nour Eddine Fahmi; Serguei Y Golovine; Sidney M Hecht
Journal:  J Am Chem Soc       Date:  2003-06-04       Impact factor: 15.419

9.  Lipids in the structure, folding, and function of the KcsA K+ channel.

Authors:  Francis I Valiyaveetil; Yufeng Zhou; Roderick MacKinnon
Journal:  Biochemistry       Date:  2002-09-03       Impact factor: 3.162

10.  Single streptomyces lividans K(+) channels: functional asymmetries and sidedness of proton activation.

Authors:  L Heginbotham; M LeMasurier; L Kolmakova-Partensky; C Miller
Journal:  J Gen Physiol       Date:  1999-10       Impact factor: 4.086

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  31 in total

Review 1.  Choosing an effective protein bioconjugation strategy.

Authors:  Nicholas Stephanopoulos; Matthew B Francis
Journal:  Nat Chem Biol       Date:  2011-11-15       Impact factor: 15.040

Review 2.  Structural correlates of selectivity and inactivation in potassium channels.

Authors:  Jason G McCoy; Crina M Nimigean
Journal:  Biochim Biophys Acta       Date:  2011-09-16

Review 3.  Atom-by-atom engineering of voltage-gated ion channels: magnified insights into function and pharmacology.

Authors:  Stephan A Pless; Robin Y Kim; Christopher A Ahern; Harley T Kurata
Journal:  J Physiol       Date:  2015-03-13       Impact factor: 5.182

4.  Ion channels and D-amino acids.

Authors:  Amitabha Chattopadhyay; Devaki A Kelkar
Journal:  J Biosci       Date:  2005-03       Impact factor: 1.826

5.  Steric selectivity in Na channels arising from protein polarization and mobile side chains.

Authors:  Dezso Boda; Wolfgang Nonner; Mónika Valiskó; Douglas Henderson; Bob Eisenberg; Dirk Gillespie
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

6.  Gating at the selectivity filter in cyclic nucleotide-gated channels.

Authors:  Jorge E Contreras; Deepa Srikumar; Miguel Holmgren
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-20       Impact factor: 11.205

7.  Semisynthetic K+ channels show that the constricted conformation of the selectivity filter is not the C-type inactivated state.

Authors:  Prasanna K Devaraneni; Alexander G Komarov; Corey A Costantino; Jordan J Devereaux; Kimberly Matulef; Francis I Valiyaveetil
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

8.  Conformational dynamics of the KcsA potassium channel governs gating properties.

Authors:  Kent A Baker; Christos Tzitzilonis; Witek Kwiatkowski; Senyon Choe; Roland Riek
Journal:  Nat Struct Mol Biol       Date:  2007-10-07       Impact factor: 15.369

9.  Heterochiral Knottin Protein: Folding and Solution Structure.

Authors:  Surin K Mong; Frank V Cochran; Hongtao Yu; Zachary Graziano; Yu-Shan Lin; Jennifer R Cochran; Bradley L Pentelute
Journal:  Biochemistry       Date:  2017-10-17       Impact factor: 3.162

10.  Quantitative Characterization of Protein-Lipid Interactions by Free Energy Simulation between Binary Bilayers.

Authors:  Soohyung Park; Min Sun Yeom; Olaf S Andersen; Richard W Pastor; Wonpil Im
Journal:  J Chem Theory Comput       Date:  2019-10-14       Impact factor: 6.006

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