Literature DB >> 15556642

Substitutional editing of transcripts from genes of cyanobacterial origin in the dinoflagellate Ceratium horridum.

Stefan Zauner1, Doris Greilinger, Thomas Laatsch, Klaus V Kowallik, Uwe-G Maier.   

Abstract

Peridinin-containing dinoflagellates, a group of alveolate organisms, harbour small plasmids called minicircles. As most of these minicircles encode genes of cyanobacterial origin, which are also found in plastid genomes of stramenopiles, they were thought to represent the plastid genome of peridinin-containing dinoflagellates. The analyses of minicircle derived mRNAs and the 16S rRNA showed that extensive editing of minicircle gene transcripts is common for Ceratium horridum. Posttranscriptional changes occur predominantly by editing A into G, but other types of editing including a previously unreported A to C transversion were also detected. This leads to amino acid changes in most cases or, in one case, to the elimination of a stop-codon. Interestingly, the edited mRNAs show higher identities to homologous sequences of other peridinin-containing dinoflagellates than their genomic copy. Thus, our results imply that transcript editing of genes of cyanobacterial origin is species specific in peridinin-containing dinoflagellates and demonstrate that editing of genes of cyanobacterial origin is not restricted to land plants.

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Year:  2004        PMID: 15556642     DOI: 10.1016/j.febslet.2004.10.060

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  25 in total

Review 1.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

2.  The D1 and D2 proteins of dinoflagellates: unusually accumulated mutations which influence on PSII photoreaction.

Authors:  Satoko Iida; Atsushi Kobiyama; Takehiko Ogata; Akio Murakami
Journal:  Photosynth Res       Date:  2008-10-15       Impact factor: 3.573

3.  Identification of transcribed and persistent variants of the psbA gene carried by plastid minicircles in a dinoflagellate.

Authors:  Satoko Iida; Atsushi Kobiyama; Takehiko Ogata; Akio Murakami
Journal:  Curr Genet       Date:  2009-10       Impact factor: 3.886

4.  Long transcripts from dinoflagellate chloroplast minicircles suggest "rolling circle" transcription.

Authors:  Yunkun Dang; Beverley R Green
Journal:  J Biol Chem       Date:  2009-11-30       Impact factor: 5.157

Review 5.  Organization and expression of organellar genomes.

Authors:  Adrian C Barbrook; Christopher J Howe; Davy P Kurniawan; Sarah J Tarr
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-03-12       Impact factor: 6.237

Review 6.  Integration of plastids with their hosts: Lessons learned from dinoflagellates.

Authors:  Richard G Dorrell; Christopher J Howe
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-20       Impact factor: 11.205

7.  Functional remodeling of RNA processing in replacement chloroplasts by pathways retained from their predecessors.

Authors:  Richard G Dorrell; Christopher J Howe
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

8.  Genome evolution of a tertiary dinoflagellate plastid.

Authors:  Tove M Gabrielsen; Marianne A Minge; Mari Espelund; Ave Tooming-Klunderud; Vishwanath Patil; Alexander J Nederbragt; Christian Otis; Monique Turmel; Kamran Shalchian-Tabrizi; Claude Lemieux; Kjetill S Jakobsen
Journal:  PLoS One       Date:  2011-04-26       Impact factor: 3.240

9.  The replication of plastid minicircles involves rolling circle intermediates.

Authors:  Siu Kai Leung; Joseph T Y Wong
Journal:  Nucleic Acids Res       Date:  2009-02-10       Impact factor: 16.971

10.  The chloroplast genome of Pellia endiviifolia: gene content, RNA-editing pattern, and the origin of chloroplast editing.

Authors:  Christopher Grosche; Helena T Funk; Uwe G Maier; Stefan Zauner
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

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