Literature DB >> 25995366

Integration of plastids with their hosts: Lessons learned from dinoflagellates.

Richard G Dorrell1, Christopher J Howe2.   

Abstract

After their endosymbiotic acquisition, plastids become intimately connected with the biology of their host. For example, genes essential for plastid function may be relocated from the genomes of plastids to the host nucleus, and pathways may evolve within the host to support the plastid. In this review, we consider the different degrees of integration observed in dinoflagellates and their associated plastids, which have been acquired through multiple different endosymbiotic events. Most dinoflagellate species possess plastids that contain the pigment peridinin and show extreme reduction and integration with the host biology. In some species, these plastids have been replaced through serial endosymbiosis with plastids derived from a different phylogenetic derivation, of which some have become intimately connected with the biology of the host whereas others have not. We discuss in particular the evolution of the fucoxanthin-containing dinoflagellates, which have adapted pathways retained from the ancestral peridinin plastid symbiosis for transcript processing in their current, serially acquired plastids. Finally, we consider why such a diversity of different degrees of integration between host and plastid is observed in different dinoflagellates and how dinoflagellates may thus inform our broader understanding of plastid evolution and function.

Entities:  

Keywords:  chloroplast genomes; dinotoms; minicircle; poly(U) tail; transcript editing

Mesh:

Substances:

Year:  2015        PMID: 25995366      PMCID: PMC4547248          DOI: 10.1073/pnas.1421380112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  79 in total

1.  Chimeric plastid proteome in the Florida "red tide" dinoflagellate Karenia brevis.

Authors:  Tetyana Nosenko; Kristy L Lidie; Frances M Van Dolah; Erika Lindquist; Jan-Fang Cheng; Debashish Bhattacharya
Journal:  Mol Biol Evol       Date:  2006-07-28       Impact factor: 16.240

2.  Genomic footprints of a cryptic plastid endosymbiosis in diatoms.

Authors:  Ahmed Moustafa; Bánk Beszteri; Uwe G Maier; Chris Bowler; Klaus Valentin; Debashish Bhattacharya
Journal:  Science       Date:  2009-06-26       Impact factor: 47.728

Review 3.  The evolution of RNA editing and pentatricopeptide repeat genes.

Authors:  Sota Fujii; Ian Small
Journal:  New Phytol       Date:  2011-05-09       Impact factor: 10.151

4.  Complete genome of a nonphotosynthetic cyanobacterium in a diatom reveals recent adaptations to an intracellular lifestyle.

Authors:  Takuro Nakayama; Ryoma Kamikawa; Goro Tanifuji; Yuichiro Kashiyama; Naohiko Ohkouchi; John M Archibald; Yuji Inagaki
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-21       Impact factor: 11.205

5.  Tertiary endosymbiosis driven genome evolution in dinoflagellate algae.

Authors:  Hwan Su Yoon; Jeremiah D Hackett; Frances M Van Dolah; Tetyana Nosenko; Kristy L Lidie; Debashish Bhattacharya
Journal:  Mol Biol Evol       Date:  2005-03-02       Impact factor: 16.240

6.  The complete plastid genomes of the two 'dinotoms' Durinskia baltica and Kryptoperidinium foliaceum.

Authors:  Behzad Imanian; Jean-François Pombert; Patrick J Keeling
Journal:  PLoS One       Date:  2010-05-19       Impact factor: 3.240

7.  Loss of nucleosomal DNA condensation coincides with appearance of a novel nuclear protein in dinoflagellates.

Authors:  Sebastian G Gornik; Kristina L Ford; Terrence D Mulhern; Antony Bacic; Geoffrey I McFadden; Ross F Waller
Journal:  Curr Biol       Date:  2012-11-15       Impact factor: 10.834

8.  DNA transfer from chloroplast to nucleus is much rarer in Chlamydomonas than in tobacco.

Authors:  Diane L Lister; Joseph M Bateman; Saul Purton; Christopher J Howe
Journal:  Gene       Date:  2003-10-16       Impact factor: 3.688

9.  Polyuridylylation and processing of transcripts from multiple gene minicircles in chloroplasts of the dinoflagellate Amphidinium carterae.

Authors:  Adrian C Barbrook; Richard G Dorrell; Jennifer Burrows; Lindsey J Plenderleith; R Ellen R Nisbet; Christopher J Howe
Journal:  Plant Mol Biol       Date:  2012-05-05       Impact factor: 4.076

10.  Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives.

Authors:  Richard G Dorrell; James Drew; R Ellen R Nisbet; Christopher J Howe
Journal:  PLoS Genet       Date:  2014-01-16       Impact factor: 5.917

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  15 in total

1.  Symbiosis becoming permanent: Survival of the luckiest.

Authors:  Patrick J Keeling; John P McCutcheon; W Ford Doolittle
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-18       Impact factor: 11.205

2.  Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome.

Authors:  Richard G Dorrell; Gillian Gile; Giselle McCallum; Raphaël Méheust; Eric P Bapteste; Christen M Klinger; Loraine Brillet-Guéguen; Katalina D Freeman; Daniel J Richter; Chris Bowler
Journal:  Elife       Date:  2017-05-12       Impact factor: 8.140

3.  Green diatom mutants reveal an intricate biosynthetic pathway of fucoxanthin.

Authors:  Yu Bai; Tianjun Cao; Oliver Dautermann; Paul Buschbeck; Michael B Cantrell; Yinjuan Chen; Christopher D Lein; Xiaohuo Shi; Maxwell A Ware; Fenghua Yang; Huan Zhang; Lihan Zhang; Graham Peers; Xiaobo Li; Martin Lohr
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-12       Impact factor: 12.779

Review 4.  Polyamines in Eukaryotes, Bacteria, and Archaea.

Authors:  Anthony J Michael
Journal:  J Biol Chem       Date:  2016-06-07       Impact factor: 5.157

5.  The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite.

Authors:  Tatiana Yurchenko; Tereza Ševčíková; Hynek Strnad; Anzhelika Butenko; Marek Eliáš
Journal:  Open Biol       Date:  2016-11       Impact factor: 6.411

6.  Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids.

Authors:  Christopher Jackson; Andrew H Knoll; Cheong Xin Chan; Heroen Verbruggen
Journal:  Sci Rep       Date:  2018-01-24       Impact factor: 4.379

7.  Deep Transcriptome Sequencing of Two Green Algae, Chara vulgaris and Chlamydomonas reinhardtii,  Provides No Evidence of Organellar RNA Editing.

Authors:  A Bruce Cahoon; John A Nauss; Conner D Stanley; Ali Qureshi
Journal:  Genes (Basel)       Date:  2017-02-20       Impact factor: 4.096

8.  Pervasive, Genome-Wide Transcription in the Organelle Genomes of Diverse Plastid-Bearing Protists.

Authors:  Matheus Sanitá Lima; David Roy Smith
Journal:  G3 (Bethesda)       Date:  2017-11-06       Impact factor: 3.154

9.  Diversity of transcripts and transcript processing forms in plastids of the dinoflagellate alga Karenia mikimotoi.

Authors:  Richard G Dorrell; George A Hinksman; Christopher J Howe
Journal:  Plant Mol Biol       Date:  2016-01-14       Impact factor: 4.076

10.  Plastid Transcript Editing across Dinoflagellate Lineages Shows Lineage-Specific Application but Conserved Trends.

Authors:  Christen M Klinger; Lucas Paoli; Robert J Newby; Matthew Yu-Wei Wang; Hyrum D Carroll; Jeffrey D Leblond; Christopher J Howe; Joel B Dacks; Chris Bowler; Aubery Bruce Cahoon; Richard G Dorrell; Elisabeth Richardson
Journal:  Genome Biol Evol       Date:  2018-04-01       Impact factor: 3.416

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