Literature DB >> 15548612

Harnessing phytochrome's glowing potential.

Amanda J Fischer1, J Clark Lagarias.   

Abstract

Directed evolution of a cyanobacterial phytochrome was undertaken to elucidate the structural basis of its light sensory activity by remodeling the chemical environment of its linear tetrapyrrole prosthetic group. In addition to identifying a small region of the apoprotein critical for maintaining phytochrome's native spectroscopic properties, our studies revealed a tyrosine-to-histidine mutation that transformed phytochrome into an intensely red fluorescent biliprotein. This tyrosine is conserved in all members of the phytochrome superfamily, implicating direct participation in the primary photoprocess of phytochromes. Fluorescent phytochrome mutants also hold great promise to expand the present repertoire of genetically encoded fluorescent proteins into the near infrared.

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Year:  2004        PMID: 15548612      PMCID: PMC536027          DOI: 10.1073/pnas.0407645101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  A new type of mutation in the plant photoreceptor phytochrome B causes loss of photoreversibility and an extremely enhanced light sensitivity.

Authors:  T Kretsch; C Poppe; E Schäfer
Journal:  Plant J       Date:  2000-05       Impact factor: 6.417

2.  First steps in the phytochrome phototransformation: a comparative femtosecond study on the forward (Pr --> Pfr) and back reaction (Pfr --> Pr).

Authors:  M Bischoff; G Hermann; S Rentsch; D Strehlow
Journal:  Biochemistry       Date:  2001-01-09       Impact factor: 3.162

Review 3.  Inter-domain crosstalk in the phytochrome molecules.

Authors:  C M Park; S H Bhoo; P S Song
Journal:  Semin Cell Dev Biol       Date:  2000-12       Impact factor: 7.727

Review 4.  Bacteriophytochromes: new tools for understanding phytochrome signal transduction.

Authors:  R D Vierstra; S J Davis
Journal:  Semin Cell Dev Biol       Date:  2000-12       Impact factor: 7.727

5.  Blue-fluorescent antibodies.

Authors:  A Simeonov; M Matsushita; E A Juban; E H Thompson; T Z Hoffman; A E Beuscher; M J Taylor; P Wirsching; W Rettig; J K McCusker; R C Stevens; D P Millar; P G Schultz; R A Lerner; K D Janda
Journal:  Science       Date:  2000-10-13       Impact factor: 47.728

Review 6.  Phytochromes and light signal perception by plants--an emerging synthesis.

Authors:  H Smith
Journal:  Nature       Date:  2000-10-05       Impact factor: 49.962

7.  Defining the bilin lyase domain: lessons from the extended phytochrome superfamily.

Authors:  S H Wu; J C Lagarias
Journal:  Biochemistry       Date:  2000-11-07       Impact factor: 3.162

Review 8.  PAS domains: internal sensors of oxygen, redox potential, and light.

Authors:  B L Taylor; I B Zhulin
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

Review 9.  The green fluorescent protein.

Authors:  R Y Tsien
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

10.  Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor.

Authors:  Y S Ho; L M Burden; J H Hurley
Journal:  EMBO J       Date:  2000-10-16       Impact factor: 11.598

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  70 in total

1.  Structure-guided engineering enhances a phytochrome-based infrared fluorescent protein.

Authors:  Michele E Auldridge; Kenneth A Satyshur; David M Anstrom; Katrina T Forest
Journal:  J Biol Chem       Date:  2011-12-30       Impact factor: 5.157

2.  Proton-transfer and hydrogen-bond interactions determine fluorescence quantum yield and photochemical efficiency of bacteriophytochrome.

Authors:  K C Toh; Emina A Stojkovic; Ivo H M van Stokkum; Keith Moffat; John T M Kennis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-30       Impact factor: 11.205

3.  Fluorescence of phytochrome adducts with synthetic locked chromophores.

Authors:  Benjamin Zienicke; Li-Yi Chen; Htoi Khawn; Mostafa A S Hammam; Hideki Kinoshita; Johannes Reichert; Anne S Ulrich; Katsuhiko Inomata; Tilman Lamparter
Journal:  J Biol Chem       Date:  2010-11-11       Impact factor: 5.157

4.  Rational design of a monomeric and photostable far-red fluorescent protein for fluorescence imaging in vivo.

Authors:  Dan Yu; Zhiqiang Dong; William Clay Gustafson; Rubén Ruiz-González; Luca Signor; Fanny Marzocca; Franck Borel; Matthew P Klassen; Kalpana Makhijani; Antoine Royant; Yuh-Nung Jan; William A Weiss; Su Guo; Xiaokun Shu
Journal:  Protein Sci       Date:  2015-12-31       Impact factor: 6.725

5.  Molecular Basis of Spectral Diversity in Near-Infrared Phytochrome-Based Fluorescent Proteins.

Authors:  Daria M Shcherbakova; Mikhail Baloban; Sergei Pletnev; Vladimir N Malashkevich; Hui Xiao; Zbigniew Dauter; Vladislav V Verkhusha
Journal:  Chem Biol       Date:  2015-11-19

6.  Chromophore structure in the photocycle of the cyanobacterial phytochrome Cph1.

Authors:  Jasper J van Thor; Mukram Mackeen; Ilya Kuprov; Raymond A Dwek; Mark R Wormald
Journal:  Biophys J       Date:  2006-06-02       Impact factor: 4.033

7.  Multichromatic control of gene expression in Escherichia coli.

Authors:  Jeffrey J Tabor; Anselm Levskaya; Christopher A Voigt
Journal:  J Mol Biol       Date:  2010-10-28       Impact factor: 5.469

8.  Biography of J. Clark Lagarias.

Authors:  Tinsley H Davis
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-06       Impact factor: 11.205

9.  Single-molecule dynamics of phytochrome-bound fluorophores probed by fluorescence correlation spectroscopy.

Authors:  Abigail E Miller; Amanda J Fischer; Ted Laurence; Christopher W Hollars; Richard J Saykally; J Clark Lagarias; Thomas Huser
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-14       Impact factor: 11.205

10.  Structure-guided engineering of plant phytochrome B with altered photochemistry and light signaling.

Authors:  Junrui Zhang; Robert J Stankey; Richard D Vierstra
Journal:  Plant Physiol       Date:  2013-01-15       Impact factor: 8.340

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