Literature DB >> 15547290

A self-splicing group I intron in DNA polymerase genes of T7-like bacteriophages.

Richard P Bonocora1, David A Shub.   

Abstract

Group I introns are inserted into genes of a wide variety of bacteriophages of gram-positive bacteria. However, among the phages of enteric and other gram-negative proteobacteria, introns have been encountered only in phage T4 and several of its close relatives. Here we report the insertion of a self-splicing group I intron in the coding sequence of the DNA polymerase genes of PhiI and W31, phages that are closely related to T7. The introns belong to subgroup IA2 and both contain an open reading frame, inserted into structural element P6a, encoding a protein belonging to the HNH family of homing endonucleases. The introns splice efficiently in vivo and self-splice in vitro under mild conditions of ionic strength and temperature. We conclude that there is no barrier for maintenance of group I introns in phages of proteobacteria.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15547290      PMCID: PMC529087          DOI: 10.1128/JB.186.23.8153-8155.2004

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  21 in total

Review 1.  Barriers to intron promiscuity in bacteria.

Authors:  D R Edgell; M Belfort; D A Shub
Journal:  J Bacteriol       Date:  2000-10       Impact factor: 3.490

2.  Distribution, sequence homology, and homing of group I introns among T-even-like bacteriophages: evidence for recent transfer of old introns.

Authors:  Linus Sandegren; Britt-Marie Sjöberg
Journal:  J Biol Chem       Date:  2004-03-15       Impact factor: 5.157

3.  The genome and proteome of coliphage T1.

Authors:  Mary D Roberts; Nancy L Martin; Andrew M Kropinski
Journal:  Virology       Date:  2004-01-05       Impact factor: 3.616

4.  The guanosine binding site of the Tetrahymena ribozyme.

Authors:  F Michel; M Hanna; R Green; D P Bartel; J W Szostak
Journal:  Nature       Date:  1989-11-23       Impact factor: 49.962

5.  Bacteriophage-Resistant Mutants in Escherichia Coli.

Authors:  M Demerec; U Fano
Journal:  Genetics       Date:  1945-03       Impact factor: 4.562

6.  Active self-splicing group I introns in 23S rRNA genes of hyperthermophilic bacteria, derived from introns in eukaryotic organelles.

Authors:  Camilla L Nesbø; W Ford Doolittle
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-28       Impact factor: 11.205

7.  Representation of the secondary and tertiary structure of group I introns.

Authors:  T R Cech; S H Damberger; R R Gutell
Journal:  Nat Struct Biol       Date:  1994-05

8.  Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution.

Authors:  S Doublié; S Tabor; A M Long; C C Richardson; T Ellenberger
Journal:  Nature       Date:  1998-01-15       Impact factor: 49.962

9.  Genes within genes: independent expression of phage T4 intron open reading frames and the genes in which they reside.

Authors:  J M Gott; A Zeeh; D Bell-Pedersen; K Ehrenman; M Belfort; D A Shub
Journal:  Genes Dev       Date:  1988-12       Impact factor: 11.361

10.  Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements.

Authors:  J J Dunn; F W Studier
Journal:  J Mol Biol       Date:  1983-06-05       Impact factor: 5.469

View more
  9 in total

1.  The genome of bacteriophage K1F, a T7-like phage that has acquired the ability to replicate on K1 strains of Escherichia coli.

Authors:  Dean Scholl; Carl Merril
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

2.  Genomic characterization of the intron-containing T7-like phage phiL7 of Xanthomonas campestris.

Authors:  Chia-Ni Lee; Juey-Wen Lin; Shu-Fen Weng; Yi-Hsiung Tseng
Journal:  Appl Environ Microbiol       Date:  2009-10-23       Impact factor: 4.792

3.  A likely pathway for formation of mobile group I introns.

Authors:  Richard P Bonocora; David A Shub
Journal:  Curr Biol       Date:  2009-02-10       Impact factor: 10.834

Review 4.  Learning to live together: mutualism between self-splicing introns and their hosts.

Authors:  David R Edgell; Venkata R Chalamcharla; Marlene Belfort
Journal:  BMC Biol       Date:  2011-04-11       Impact factor: 7.431

5.  Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies.

Authors:  Jason W Shapiro; Catherine Putonti
Journal:  PeerJ       Date:  2021-08-06       Impact factor: 2.984

6.  Isolation of Novel Xanthomonas Phages Infecting the Plant Pathogens X. translucens and X. campestris.

Authors:  Sebastian H Erdrich; Vikas Sharma; Ulrich Schurr; Borjana Arsova; Julia Frunzke
Journal:  Viruses       Date:  2022-06-30       Impact factor: 5.818

7.  I-PfoP3I: a novel nicking HNH homing endonuclease encoded in the group I intron of the DNA polymerase gene in Phormidium foveolarum phage Pf-WMP3.

Authors:  Shuanglei Kong; Xinyao Liu; Liwen Fu; Xiangchun Yu; Chengcai An
Journal:  PLoS One       Date:  2012-08-27       Impact factor: 3.240

8.  Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family.

Authors:  Bareket Dassa; Nir London; Barry L Stoddard; Ora Schueler-Furman; Shmuel Pietrokovski
Journal:  Nucleic Acids Res       Date:  2009-03-05       Impact factor: 16.971

9.  F-CphI represents a new homing endonuclease family using the Endo VII catalytic motif.

Authors:  Xiaoting Fang; YongLiang Jiang; Kim Li; Qinglu Zeng
Journal:  Mob DNA       Date:  2018-08-09
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.