Literature DB >> 15547135

A synthetic A tail rescues yeast nuclear accumulation of a ribozyme-terminated transcript.

Ken Dower1, Nicolas Kuperwasser, Houra Merrikh, Michael Rosbash.   

Abstract

To investigate the role of 3' end formation in yeast mRNA export, we replaced the mRNA cleavage and polyadenylation signal with a self-cleaving hammerhead ribozyme element. The resulting RNA is unadenylated and accumulates near its site of synthesis. Nonetheless, a significant fraction of this RNA reaches the cytoplasm. Nuclear accumulation was relieved by insertion of a stretch of DNA-encoded adenosine residues immediately upstream of the ribozyme element (a synthetic A tail). This indicates that a 3' stretch of adenosines can promote export, independently of cleavage and polyadenylation. We further show that a synthetic A tail-containing RNA is unaffected in 3' end formation mutant strains, in which a normally cleaved and polyadenylated RNA accumulates within nuclei. Our results support a model in which a polyA tail contributes to efficient mRNA progression away from the gene, most likely through the action of the yeast polyA-tail binding protein Pab1p.

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Year:  2004        PMID: 15547135      PMCID: PMC1370677          DOI: 10.1261/rna.7166704

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  68 in total

1.  The nuclear poly(A) binding protein, PABP2, forms an oligomeric particle covering the length of the poly(A) tail.

Authors:  R W Keller; U Kühn; M Aragón; L Bornikova; E Wahle; D G Bear
Journal:  J Mol Biol       Date:  2000-03-31       Impact factor: 5.469

2.  Evidence that poly(A) binding protein has an evolutionarily conserved function in facilitating mRNA biogenesis and export.

Authors:  Julia A Chekanova; Dmitry A Belostotsky
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

3.  Polyadenylation of rRNA- and tRNA-based yeast transcripts cleaved by internal ribozyme activity.

Authors:  Katrin Düvel; Ralph Pries; Gerhard H Braus
Journal:  Curr Genet       Date:  2003-05-14       Impact factor: 3.886

4.  The multiple RNA-binding domains of the mRNA poly(A)-binding protein have different RNA-binding activities.

Authors:  C G Burd; E L Matunis; G Dreyfuss
Journal:  Mol Cell Biol       Date:  1991-07       Impact factor: 4.272

5.  The poly(A) binding protein is required for poly(A) shortening and 60S ribosomal subunit-dependent translation initiation.

Authors:  A B Sachs; R W Davis
Journal:  Cell       Date:  1989-09-08       Impact factor: 41.582

6.  A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability.

Authors:  A B Sachs; R W Davis; R D Kornberg
Journal:  Mol Cell Biol       Date:  1987-09       Impact factor: 4.272

7.  The yeast hnRNP-like protein Hrp1/Nab4 sccumulates in the cytoplasm after hyperosmotic stress: a novel Fps1-dependent response.

Authors:  Michael F Henry; Daniel Mandel; Valerie Routson; Pamela A Henry
Journal:  Mol Biol Cell       Date:  2003-05-29       Impact factor: 4.138

8.  A single gene from yeast for both nuclear and cytoplasmic polyadenylate-binding proteins: domain structure and expression.

Authors:  A B Sachs; M W Bond; R D Kornberg
Journal:  Cell       Date:  1986-06-20       Impact factor: 41.582

9.  Localization of nuclear retained mRNAs in Saccharomyces cerevisiae.

Authors:  Rune Thomsen; Domenico Libri; Jocelyne Boulay; Michael Rosbash; Torben Heick Jensen
Journal:  RNA       Date:  2003-09       Impact factor: 4.942

10.  Mating type-dependent constraints on the mobility of the left arm of yeast chromosome III.

Authors:  Debra A Bressan; Julio Vazquez; James E Haber
Journal:  J Cell Biol       Date:  2004-01-26       Impact factor: 10.539

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  46 in total

1.  An enhanced H/ACA RNP assembly mechanism for human telomerase RNA.

Authors:  Emily D Egan; Kathleen Collins
Journal:  Mol Cell Biol       Date:  2012-04-23       Impact factor: 4.272

Review 2.  The multitasking polyA tail: nuclear RNA maturation, degradation and export.

Authors:  Agnieszka Tudek; Marta Lloret-Llinares; Torben Heick Jensen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

3.  A Kaposi's sarcoma virus RNA element that increases the nuclear abundance of intronless transcripts.

Authors:  Nicholas K Conrad; Joan A Steitz
Journal:  EMBO J       Date:  2005-04-28       Impact factor: 11.598

4.  Dramatically improved RNA in situ hybridization signals using LNA-modified probes.

Authors:  Rune Thomsen; Peter Stein Nielsen; Torben Heick Jensen
Journal:  RNA       Date:  2005-09-21       Impact factor: 4.942

5.  Yeast transcripts cleaved by an internal ribozyme provide new insight into the role of the cap and poly(A) tail in translation and mRNA decay.

Authors:  Stacie Meaux; Ambro Van Hoof
Journal:  RNA       Date:  2006-05-19       Impact factor: 4.942

6.  3'-end formation signals modulate the association of genes with the nuclear periphery as well as mRNP dot formation.

Authors:  Katharine C Abruzzi; Dmitry A Belostotsky; Julia A Chekanova; Ken Dower; Michael Rosbash
Journal:  EMBO J       Date:  2006-08-31       Impact factor: 11.598

7.  A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay.

Authors:  Isabelle Behm-Ansmant; David Gatfield; Jan Rehwinkel; Valérie Hilgers; Elisa Izaurralde
Journal:  EMBO J       Date:  2007-02-22       Impact factor: 11.598

8.  Recognition of polyadenosine RNA by zinc finger proteins.

Authors:  Seth M Kelly; Suzette A Pabit; Chad M Kitchen; Peng Guo; Kavita A Marfatia; T J Murphy; Anita H Corbett; Keith M Berland
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-13       Impact factor: 11.205

9.  Sus1, Sac3, and Thp1 mediate post-transcriptional tethering of active genes to the nuclear rim as well as to non-nascent mRNP.

Authors:  Julia A Chekanova; Katharine C Abruzzi; Michael Rosbash; Dmitry A Belostotsky
Journal:  RNA       Date:  2007-11-14       Impact factor: 4.942

10.  Nonsense-mediated mRNA decay in yeast does not require PAB1 or a poly(A) tail.

Authors:  Stacie Meaux; Ambro van Hoof; Kristian E Baker
Journal:  Mol Cell       Date:  2008-01-18       Impact factor: 17.970

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