Literature DB >> 15538877

Charge-on-spring polarizable water models revisited: from water clusters to liquid water to ice.

Haibo Yu1, Wilfred F van Gunsteren.   

Abstract

The properties of two improved versions of charge-on-spring (COS) polarizable water models (COS/G2 and COS/G3) that explicitly include nonadditive polarization effects are reported. In COS models, the polarization is represented via a self-consistently induced dipole moment consisting of a pair of separated charges. A previous polarizable water model (COS/B2), upon which the improved versions are based, was developed by Yu, Hansson, and van Gunsteren. To improve the COS/B2 model, which overestimated the dielectric permittivity, one additional virtual atomic site was used to reproduce the water monomer quadrupole moments besides the water monomer dipole moment in the gas phase. The molecular polarizability, residing on the virtual atomic site, and Lennard-Jones parameters for oxygen-oxygen interactions were varied to reproduce the experimental values for the heat of vaporization and the density of liquid water at room temperature and pressure. The improved models were used to study the properties of liquid water at various thermodynamic states as well as gaseous water clusters and ice. Overall, good agreement is obtained between simulated properties and those derived from experiments and ab initio calculations. The COS/G2 and COS/G3 models may serve as simple, classical, rigid, polarizable water models for the study of organic solutes and biopolymers. Due to its simplicity, COS type of polarization can straightforwardly be used to introduce explicit polarization into (bio)molecular force fields.

Entities:  

Year:  2004        PMID: 15538877     DOI: 10.1063/1.1805516

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  20 in total

1.  Simulating water with the self-consistent-charge density functional tight binding method: from molecular clusters to the liquid state.

Authors:  Hao Hu; Zhenyu Lu; Marcus Elstner; Jan Hermans; Weitao Yang
Journal:  J Phys Chem A       Date:  2007-05-03       Impact factor: 2.781

Review 2.  Classical electrostatics for biomolecular simulations.

Authors:  G Andrés Cisneros; Mikko Karttunen; Pengyu Ren; Celeste Sagui
Journal:  Chem Rev       Date:  2013-08-27       Impact factor: 60.622

3.  Relaxation of backbone bond geometry improves protein energy landscape modeling.

Authors:  Patrick Conway; Michael D Tyka; Frank DiMaio; David E Konerding; David Baker
Journal:  Protein Sci       Date:  2014-01       Impact factor: 6.725

4.  Experimental triplet and quadruplet fluctuation densities and spatial distribution function integrals for pure liquids.

Authors:  Elizabeth A Ploetz; Sadish Karunaweera; Paul E Smith
Journal:  J Chem Phys       Date:  2015-01-28       Impact factor: 3.488

5.  Six-site polarizable model of water based on the classical Drude oscillator.

Authors:  Wenbo Yu; Pedro E M Lopes; Benoît Roux; Alexander D MacKerell
Journal:  J Chem Phys       Date:  2013-01-21       Impact factor: 3.488

6.  A combined experimental and theoretical study of ion solvation in liquid N-methylacetamide.

Authors:  Haibo Yu; Christopher L Mazzanti; Troy W Whitfield; Roger E Koeppe; Olaf S Andersen; Benoît Roux
Journal:  J Am Chem Soc       Date:  2010-08-11       Impact factor: 15.419

7.  Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields.

Authors:  Dmitry Bedrov; Jean-Philip Piquemal; Oleg Borodin; Alexander D MacKerell; Benoît Roux; Christian Schröder
Journal:  Chem Rev       Date:  2019-05-29       Impact factor: 60.622

Review 8.  Molecular dynamics of water in the neighborhood of aquaporins.

Authors:  Marcelo Ozu; H Ariel Alvarez; Andrés N McCarthy; J Raúl Grigera; Osvaldo Chara
Journal:  Eur Biophys J       Date:  2012-12-29       Impact factor: 1.733

9.  Signature properties of water: Their molecular electronic origins.

Authors:  Vlad P Sokhan; Andrew P Jones; Flaviu S Cipcigan; Jason Crain; Glenn J Martyna
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-04       Impact factor: 11.205

10.  Polarization effects in molecular mechanical force fields.

Authors:  Piotr Cieplak; François-Yves Dupradeau; Yong Duan; Junmei Wang
Journal:  J Phys Condens Matter       Date:  2009-07-24       Impact factor: 2.333

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