Literature DB >> 17474727

Simulating water with the self-consistent-charge density functional tight binding method: from molecular clusters to the liquid state.

Hao Hu1, Zhenyu Lu, Marcus Elstner, Jan Hermans, Weitao Yang.   

Abstract

The recently developed self-consistent-charge density functional tight binding (SCCDFTB) method provides an accurate and inexpensive quantum mechanical solution to many molecular systems of interests. To examine the performance of the SCCDFTB method on (liquid) water, the most fundamental yet indispensable molecule in biological systems, we report here the simulation results of water in sizes ranging from molecular clusters to the liquid state. The latter simulation was achieved through the use of the linear scaling divide-and-conquer approach. The results of liquid water simulation indicate that the SCCDFTB method can describe the structural and energetics of liquid water in qualitative agreement with experiments, and the results for water clusters suggest potential future improvements of the SCCDFTB method.

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Year:  2007        PMID: 17474727      PMCID: PMC2518942          DOI: 10.1021/jp070308d

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  15 in total

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Authors:  R Parthasarathi; V Subramanian; N Sathyamurthy
Journal:  J Phys Chem A       Date:  2005-02-10       Impact factor: 2.781

7.  Global search for minimum energy (H2O)n clusters, n = 3-5.

Authors:  Mary Beth Day; Karl N Kirschner; George C Shields
Journal:  J Phys Chem A       Date:  2005-08-04       Impact factor: 2.781

8.  Development of effective quantum mechanical/molecular mechanical (QM/MM) methods for complex biological processes.

Authors:  Demian Riccardi; Patricia Schaefer; Yang Yang; Haibo Yu; Nilanjan Ghosh; Xavier Prat-Resina; Peter König; Guohui Li; Dingguo Xu; Hua Guo; Marcus Elstner; Qiang Cui
Journal:  J Phys Chem B       Date:  2006-04-06       Impact factor: 2.991

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Authors:  Annika Lenz; Lars Ojamäe
Journal:  Phys Chem Chem Phys       Date:  2005-05-07       Impact factor: 3.676

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Authors:  Marcus Elstner; Qiang Cui; Petra Munih; Efthimios Kaxiras; Thomas Frauenheim; Martin Karplus
Journal:  J Comput Chem       Date:  2003-04-15       Impact factor: 3.376

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  20 in total

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Journal:  J Chem Phys       Date:  2008-08-07       Impact factor: 3.488

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4.  Linear-scaling quantum calculations using non-orthogonal localized molecular orbitals.

Authors:  Steven K Burger; Weitao Yang
Journal:  J Phys Condens Matter       Date:  2008-07-23       Impact factor: 2.333

5.  Modeling and simulation of electronic structure, material interface and random doping in nano electronic devices.

Authors:  Duan Chen; Guo-Wei Wei
Journal:  J Comput Phys       Date:  2010-06-20       Impact factor: 3.553

6.  Quantum mechanical force fields for condensed phase molecular simulations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Phys Condens Matter       Date:  2017-08-17       Impact factor: 2.333

7.  Liquid water simulations with the density fragment interaction approach.

Authors:  Xiangqian Hu; Yingdi Jin; Xiancheng Zeng; Hao Hu; Weitao Yang
Journal:  Phys Chem Chem Phys       Date:  2012-04-02       Impact factor: 3.676

8.  A variational linear-scaling framework to build practical, efficient next-generation orbital-based quantum force fields.

Authors:  Timothy J Giese; Haoyuan Chen; Thakshila Dissanayake; George M Giambaşu; Hugh Heldenbrand; Ming Huang; Erich R Kuechler; Tai-Sung Lee; Maria T Panteva; Brian K Radak; Darrin M York
Journal:  J Chem Theory Comput       Date:  2013-03-12       Impact factor: 6.006

9.  Ewald-based methods for Gaussian integral evaluation: application to a new parameterization of GEM.

Authors:  Robert E Duke; G Andrés Cisneros
Journal:  J Mol Model       Date:  2019-09-09       Impact factor: 1.810

10.  GEM*: A Molecular Electronic Density-Based Force Field for Molecular Dynamics Simulations.

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Journal:  J Chem Theory Comput       Date:  2014-03-03       Impact factor: 6.006

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