Literature DB >> 15531636

RecA-dependent mutants in Escherichia coli reveal strategies to avoid chromosomal fragmentation.

Elena A Kouzminova1, Ella Rotman, Lee Macomber, Jian Zhang, Andrei Kuzminov.   

Abstract

RecA- and RecBC-catalyzed repair in eubacteria assembles chromosomes fragmented by double-strand breaks. We propose that recA mutants, being unable to repair fragmented chromosomes, depend on various strategies designed to avoid chromosomal fragmentation. To identify chromosomal fragmentation-avoidance strategies, we screened for Escherichia coli mutants synthetically inhibited in combination with recA inactivation by identifying clones unable to lose a plasmid carrying the recA(+) gene. Using this screen, we have isolated several RecA-dependent mutants and assigned them to three distinct areas of metabolism. The tdk and rdgB mutants affect synthesis of DNA precursors. The fur, ubiE, and ubiH mutants are likely to have increased levels of reactive oxygen species. The seqA, topA mutants and an insertion in smtA perturbing the downstream mukFEB genes affect nucleoid administration. All isolated mutants show varying degree of SOS induction, indicating elevated levels of chromosomal lesions. As predicted, mutants in rdgB, seqA, smtA, topA, and fur show increased levels of chromosomal fragmentation in recBC mutant conditions. Future characterization of these RecA-dependent mutants will define mechanisms of chromosomal fragmentation avoidance.

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Year:  2004        PMID: 15531636      PMCID: PMC528955          DOI: 10.1073/pnas.0405943101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  46 in total

1.  Effect of bacteria growth temperature on the distribution of supercoiled DNA and its thermal stability.

Authors:  Jozef Adamcík; Viktor Víglaský; Francesco Valle; Marián Antalík; Dusan Podhradský; Giovanni Dietler
Journal:  Electrophoresis       Date:  2002-09       Impact factor: 3.535

Review 2.  RecA protein: structure, function, and role in recombinational DNA repair.

Authors:  A I Roca; M M Cox
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1997

3.  Repair of DNA double-strand breaks in Escherichia coli, which requires recA function and the presence of a duplicate genome.

Authors:  F Krasin; F Hutchinson
Journal:  J Mol Biol       Date:  1977-10-15       Impact factor: 5.469

4.  DNA double-strand breaks caused by replication arrest.

Authors:  B Michel; S D Ehrlich; M Uzest
Journal:  EMBO J       Date:  1997-01-15       Impact factor: 11.598

5.  Growth-dependent DNA breakage and cell death in a gyrase mutant of Salmonella.

Authors:  E Garí; L Bossi; N Figueroa-Bossi
Journal:  Genetics       Date:  2001-12       Impact factor: 4.562

6.  A mutation in mouse rad51 results in an early embryonic lethal that is suppressed by a mutation in p53.

Authors:  D S Lim; P Hasty
Journal:  Mol Cell Biol       Date:  1996-12       Impact factor: 4.272

7.  Superoxide accelerates DNA damage by elevating free-iron levels.

Authors:  K Keyer; J A Imlay
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

8.  A class of gyrase mutants of Salmonella typhimurium show quinolone-like lethality and require rec functions for viability.

Authors:  E Garí; N Figueroa-Bossi; A B Blanc-Potard; F Spirito; M B Schmid; L Bossi
Journal:  Mol Microbiol       Date:  1996-07       Impact factor: 3.501

9.  Lethal oxidative damage and mutagenesis are generated by iron in delta fur mutants of Escherichia coli: protective role of superoxide dismutase.

Authors:  D Touati; M Jacques; B Tardat; L Bouchard; S Despied
Journal:  J Bacteriol       Date:  1995-05       Impact factor: 3.490

10.  Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli.

Authors:  K Yamanaka; T Ogura; H Niki; S Hiraga
Journal:  Mol Gen Genet       Date:  1996-02-25
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  42 in total

1.  Replication forks stalled at ultraviolet lesions are rescued via RecA and RuvABC protein-catalyzed disintegration in Escherichia coli.

Authors:  Sharik R Khan; Andrei Kuzminov
Journal:  J Biol Chem       Date:  2011-12-21       Impact factor: 5.157

2.  The rcbA gene product reduces spontaneous and induced chromosome breaks in Escherichia coli.

Authors:  Magdalena M Felczak; Jon M Kaguni
Journal:  J Bacteriol       Date:  2012-02-17       Impact factor: 3.490

3.  Chromosomal fragmentation is the major consequence of the rdgB defect in Escherichia coli.

Authors:  Lisa Lukas; Andrei Kuzminov
Journal:  Genetics       Date:  2005-12-01       Impact factor: 4.562

4.  Roles of PriA protein and double-strand DNA break repair functions in UV-induced restriction alleviation in Escherichia coli.

Authors:  Ivana Ivancić-Bacće; Ignacija Vlasić; Gordana Cogelja-Cajo; Krunoslav Brcić-Kostić; Erika Salaj-Smic
Journal:  Genetics       Date:  2006-10-08       Impact factor: 4.562

5.  SOS induction by stabilized topoisomerase IA cleavage complex occurs via the RecBCD pathway.

Authors:  Jeanette H Sutherland; Bokun Cheng; I-Fen Liu; Yuk-Ching Tse-Dinh
Journal:  J Bacteriol       Date:  2008-02-29       Impact factor: 3.490

6.  Depletion of RNase HI activity in Escherichia coli lacking DNA topoisomerase I leads to defects in DNA supercoiling and segregation.

Authors:  Valentine Usongo; Flora Nolent; Patrick Sanscartier; Cynthia Tanguay; Sonia Broccoli; Imad Baaklini; Karl Drlica; Marc Drolet
Journal:  Mol Microbiol       Date:  2008-06-28       Impact factor: 3.501

7.  Synthetic lethality with the dut defect in Escherichia coli reveals layers of DNA damage of increasing complexity due to uracil incorporation.

Authors:  Helen Ting; Elena A Kouzminova; Andrei Kuzminov
Journal:  J Bacteriol       Date:  2008-06-27       Impact factor: 3.490

Review 8.  Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways.

Authors:  Hannah L Klein; Giedrė Bačinskaja; Jun Che; Anais Cheblal; Rajula Elango; Anastasiya Epshtein; Devon M Fitzgerald; Belén Gómez-González; Sharik R Khan; Sandeep Kumar; Bryan A Leland; Léa Marie; Qian Mei; Judith Miné-Hattab; Alicja Piotrowska; Erica J Polleys; Christopher D Putnam; Elina A Radchenko; Anissia Ait Saada; Cynthia J Sakofsky; Eun Yong Shim; Mathew Stracy; Jun Xia; Zhenxin Yan; Yi Yin; Andrés Aguilera; Juan Lucas Argueso; Catherine H Freudenreich; Susan M Gasser; Dmitry A Gordenin; James E Haber; Grzegorz Ira; Sue Jinks-Robertson; Megan C King; Richard D Kolodner; Andrei Kuzminov; Sarah Ae Lambert; Sang Eun Lee; Kyle M Miller; Sergei M Mirkin; Thomas D Petes; Susan M Rosenberg; Rodney Rothstein; Lorraine S Symington; Pawel Zawadzki; Nayun Kim; Michael Lisby; Anna Malkova
Journal:  Microb Cell       Date:  2019-01-07

9.  Replication fork inhibition in seqA mutants of Escherichia coli triggers replication fork breakage.

Authors:  Ella Rotman; Sharik R Khan; Elena Kouzminova; Andrei Kuzminov
Journal:  Mol Microbiol       Date:  2014-05-23       Impact factor: 3.501

10.  Role of accessory DNA polymerases in DNA replication in Escherichia coli: analysis of the dnaX36 mutator mutant.

Authors:  Damian Gawel; Phuong T Pham; Iwona J Fijalkowska; Piotr Jonczyk; Roel M Schaaper
Journal:  J Bacteriol       Date:  2007-12-21       Impact factor: 3.490

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