Literature DB >> 1552835

Five major nuclear ribosomal repeats represent a large and variable fraction of the genomic DNA of Picea rubens and P. mariana.

M S Bobola1, D E Smith, A S Klein.   

Abstract

The nuclear ribosomal repeats for the 18S, 5.8S, and 26S RNAs of two closely related Picea (spruce) species were characterized by restriction mapping and Southern blot hybridization. Restriction polymorphisms were identified in the IGS and ITS sequences; however, no polymorphism was species specific. As many as five different rDNA repeat units were observed in individual genomes. The repeat size for these gymnosperms ranged from a minimum of 32 kbp to greater than 40 kbp, two- to threefold larger than the typical angiosperm rDNA unit. Slot-blot hybridizations were used to determine the nuclear rDNA copy concentration. Among P. rubens individuals threefold variation was observed in the rDNA copy concentration, and among P. mariana individuals such variation was as much as sixfold. At a size greater than 32 kbp and at a concentration averaging 1.2-1.3 x 10(4) copies/pg, the rDNA constitutes approximately 4% of the total genome. Regression analysis revealed a significant relationship between copy concentration of the rDNA repeat unit in P. rubens and geographic origins. Differences in the rDNA content in Picea could contribute to the variation, in overall genome size, that has been observed within conifer species.

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Year:  1992        PMID: 1552835     DOI: 10.1093/oxfordjournals.molbev.a040702

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  11 in total

1.  Chromosomal localization of 5S and 18S rDNA in five species of subgenus Strobus and their implications for genome evolution of Pinus.

Authors:  Qing Cai; Daming Zhang; Zhan-Lin Liu; Xiao-Ru Wang
Journal:  Ann Bot       Date:  2006-02-15       Impact factor: 4.357

2.  Length variation in the internal transcribed spacers of ribosomal DNA in Picea abies and related species.

Authors:  P Karvonen; A E Szmidt; O Savolainen
Journal:  Theor Appl Genet       Date:  1994-12       Impact factor: 5.699

3.  Island colonization and evolution of the insular woody habit in Echium L. (Boraginaceae).

Authors:  U R Böhle; H H Hilger; W F Martin
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

4.  A PCR based SNPs marker for specific characterization of English walnut (Juglans regia L.) cultivars.

Authors:  Loredana F Ciarmiello; Pasquale Piccirillo; Giovanni Pontecorvo; Antonio De Luca; Ioannis Kafantaris; Pasqualina Woodrow
Journal:  Mol Biol Rep       Date:  2010-06-25       Impact factor: 2.316

5.  Pinus banksiana has at least seven expressed alcohol dehydrogenase genes in two linked groups.

Authors:  D J Perry; G R Furnier
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-12       Impact factor: 11.205

6.  Nucleotide sequence, structural organization and length heterogeneity of ribosomal DNA intergenic spacer in Quercus petraea (Matt.) Liebl. and Q. robur L.

Authors:  Natasa Bauer; Tomislav Horvat; Ivan Birus; Vedrana Vicić; Vlatka Zoldos
Journal:  Mol Genet Genomics       Date:  2008-12-04       Impact factor: 3.291

7.  Structure of the intergenic spacer region from the ribosomal RNA gene family of white spruce (Picea glauca).

Authors:  R N Beech; C Strobeck
Journal:  Plant Mol Biol       Date:  1993-08       Impact factor: 4.076

8.  Marked intragenomic heterogeneity and geographical differentiation of nrDNA ITS in Larix potaninii (Pinaceae).

Authors:  Xiao-Xin Wei; Xiao-Quan Wang; De-Yuan Hong
Journal:  J Mol Evol       Date:  2003-12       Impact factor: 2.395

9.  Organization of nuclear ribosomal DNA and species-specific polymorphism in closely related Fraxinus excelsior and F. oxyphylla.

Authors:  G Jeandroz; F Faivre-Rampant; A Pugin; J Bousquet; A Bervillé
Journal:  Theor Appl Genet       Date:  1995-11       Impact factor: 5.699

10.  Dancing together and separate again: gymnosperms exhibit frequent changes of fundamental 5S and 35S rRNA gene (rDNA) organisation.

Authors:  S Garcia; A Kovařík
Journal:  Heredity (Edinb)       Date:  2013-03-20       Impact factor: 3.821

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