Literature DB >> 15517022

RNA-interference-based functional genomics in mammalian cells: reverse genetics coming of age.

Jose Silva1, Kenneth Chang, Gregory J Hannon, Fabiola V Rivas.   

Abstract

Sequencing of complete genomes has provided researchers with a wealth of information to study genome organization, genetic instability, and polymorphisms, as well as a knowledge of all potentially expressed genes. The identification of all genes encoded in the human genome opens the door for large-scale systematic gene silencing using small interfering RNAs (siRNAs) and short hairpin RNAs (shRNAs). With the recent development of siRNA and shRNA expression libraries, the application of RNAi technology to assign function to cancer genes and to delineate molecular pathways in which these genes affect in normal and transformed cells, will contribute significantly to the knowledge necessary to develop new and also improve existing cancer therapy.

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Year:  2004        PMID: 15517022     DOI: 10.1038/sj.onc.1208176

Source DB:  PubMed          Journal:  Oncogene        ISSN: 0950-9232            Impact factor:   9.867


  28 in total

1.  A versatile single-plasmid system for tissue-specific and inducible control of gene expression in transgenic mice.

Authors:  Jae-Kyun Ko; Kyoung-Han Choi; Xiaoli Zhao; Shinji Komazaki; Zui Pan; Noah Weisleder; Jianjie Ma
Journal:  FASEB J       Date:  2011-04-25       Impact factor: 5.191

Review 2.  RNA interference: ready to silence cancer?

Authors:  Simone Mocellin; Rodolfo Costa; Donato Nitti
Journal:  J Mol Med (Berl)       Date:  2005-11-09       Impact factor: 4.599

3.  A lentiviral microRNA-based system for single-copy polymerase II-regulated RNA interference in mammalian cells.

Authors:  Frank Stegmeier; Guang Hu; Richard J Rickles; Gregory J Hannon; Stephen J Elledge
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-01       Impact factor: 11.205

4.  Dicer recognizes the 5' end of RNA for efficient and accurate processing.

Authors:  Jong-Eun Park; Inha Heo; Yuan Tian; Dhirendra K Simanshu; Hyeshik Chang; David Jee; Dinshaw J Patel; V Narry Kim
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

5.  Optimization of a Genome-Wide Disordered Lentivector-Based Short Hairpin RNA Library.

Authors:  O A Guryanova; M Makhanov; A A Chenchik; P M Chumakov; E I Frolova
Journal:  Mol Biol       Date:  2006-05-01       Impact factor: 1.374

Review 6.  Genome-wide screening using RNA interference to study host factors in viral replication and pathogenesis.

Authors:  Laurent Houzet; Kuan-Teh Jeang
Journal:  Exp Biol Med (Maywood)       Date:  2011-07-04

7.  High-throughput RNAi screening in vitro: from cell lines to primary cells.

Authors:  Dmitriy Ovcharenko; Richard Jarvis; Scott Hunicke-Smith; Kevin Kelnar; David Brown
Journal:  RNA       Date:  2005-06       Impact factor: 4.942

8.  Systems biology in cancer research: genomics to cellomics.

Authors:  Jackie L Stilwell; Yinghui Guan; Richard M Neve; Joe W Gray
Journal:  Methods Mol Biol       Date:  2007

9.  Identification of GAS1 as an epirubicin resistance-related gene in human gastric cancer cells with a partially randomized small interfering RNA library.

Authors:  Lina Zhao; Yanglin Pan; Yi Gang; Honghong Wang; Haifeng Jin; Jun Tie; Lin Xia; Yongguo Zhang; Lijie He; Liping Yao; Taidong Qiao; Tingting Li; Zhiguo Liu; Daiming Fan
Journal:  J Biol Chem       Date:  2009-07-28       Impact factor: 5.157

10.  Versatile applications of transcriptional pulsing to study mRNA turnover in mammalian cells.

Authors:  Chyi-Ying A Chen; Yukiko Yamashita; Tsung-Cheng Chang; Akio Yamashita; Wenmiao Zhu; Zhenping Zhong; Ann-Bin Shyu
Journal:  RNA       Date:  2007-08-29       Impact factor: 4.942

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