Literature DB >> 21727185

Genome-wide screening using RNA interference to study host factors in viral replication and pathogenesis.

Laurent Houzet1, Kuan-Teh Jeang.   

Abstract

With the recent development of short interfering RNA and short hairpin RNA expression libraries, RNA interference (RNAi) technology has been extensively employed to identify genes involved in diverse cellular processes, such as signal transduction, cell cycle, cancer biology and host-pathogen interactions. In the field of viral infection, this approach has already identified hundreds of new genes not previously known to be important for various virus lifecycles. In this brief review, we focus on recent studies performed using genome-wide RNAi-based screens in mammalian cells for the identification of essential host factors for viral infection and pathogenesis.

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Year:  2011        PMID: 21727185      PMCID: PMC3415036          DOI: 10.1258/ebm.2010.010272

Source DB:  PubMed          Journal:  Exp Biol Med (Maywood)        ISSN: 1535-3699


  50 in total

1.  Cellular microRNA expression correlates with susceptibility of monocytes/macrophages to HIV-1 infection.

Authors:  Xu Wang; Li Ye; Wei Hou; Yu Zhou; Yan-Jian Wang; David S Metzger; Wen-Zhe Ho
Journal:  Blood       Date:  2008-11-17       Impact factor: 22.113

Review 2.  Knockdown screens to knockout HIV-1.

Authors:  Stephen P Goff
Journal:  Cell       Date:  2008-10-31       Impact factor: 41.582

3.  RNA interference screen for human genes associated with West Nile virus infection.

Authors:  Manoj N Krishnan; Aylwin Ng; Bindu Sukumaran; Felicia D Gilfoy; Pradeep D Uchil; Hameeda Sultana; Abraham L Brass; Rachel Adametz; Melody Tsui; Feng Qian; Ruth R Montgomery; Sima Lev; Peter W Mason; Raymond A Koski; Stephen J Elledge; Ramnik J Xavier; Herve Agaisse; Erol Fikrig
Journal:  Nature       Date:  2008-09-11       Impact factor: 49.962

4.  Highly parallel identification of essential genes in cancer cells.

Authors:  Biao Luo; Hiu Wing Cheung; Aravind Subramanian; Tanaz Sharifnia; Michael Okamoto; Xiaoping Yang; Greg Hinkle; Jesse S Boehm; Rameen Beroukhim; Barbara A Weir; Craig Mermel; David A Barbie; Tarif Awad; Xiaochuan Zhou; Tuyen Nguyen; Bruno Piqani; Cheng Li; Todd R Golub; Matthew Meyerson; Nir Hacohen; William C Hahn; Eric S Lander; David M Sabatini; David E Root
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-17       Impact factor: 11.205

Review 5.  RNAi suppressors encoded by pathogenic human viruses.

Authors:  Walter de Vries; Ben Berkhout
Journal:  Int J Biochem Cell Biol       Date:  2008-05-16       Impact factor: 5.085

6.  The NS3 protein of rice hoja blanca virus complements the RNAi suppressor function of HIV-1 Tat.

Authors:  Esther Schnettler; Walter de Vries; Hans Hemmes; Joost Haasnoot; Richard Kormelink; Rob Goldbach; Ben Berkhout
Journal:  EMBO Rep       Date:  2009-02-13       Impact factor: 8.807

7.  HIV-1 Tat RNA silencing suppressor activity is conserved across kingdoms and counteracts translational repression of HIV-1.

Authors:  Shuiming Qian; Xuehua Zhong; Lianbo Yu; Biao Ding; Peter de Haan; Kathleen Boris-Lawrie
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-02       Impact factor: 11.205

8.  Genome-scale RNAi screen for host factors required for HIV replication.

Authors:  Honglin Zhou; Min Xu; Qian Huang; Adam T Gates; Xiaohua D Zhang; John C Castle; Erica Stec; Marc Ferrer; Berta Strulovici; Daria J Hazuda; Amy S Espeseth
Journal:  Cell Host Microbe       Date:  2008-10-30       Impact factor: 21.023

9.  Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication.

Authors:  Jasmine K Ahluwalia; Sohrab Zafar Khan; Kartik Soni; Pratima Rawat; Ankit Gupta; Manoj Hariharan; Vinod Scaria; Mukesh Lalwani; Beena Pillai; Debashis Mitra; Samir K Brahmachari
Journal:  Retrovirology       Date:  2008-12-23       Impact factor: 4.602

10.  MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals.

Authors:  Laurent Houzet; Man Lung Yeung; Valery de Lame; Dhara Desai; Stephen M Smith; Kuan-Teh Jeang
Journal:  Retrovirology       Date:  2008-12-29       Impact factor: 4.602

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  19 in total

1.  Identification of Tf1 integration events in S. pombe under nonselective conditions.

Authors:  Kristina E Cherry; Willis E Hearn; Osborne Y K Seshie; Teresa L Singleton
Journal:  Gene       Date:  2014-03-25       Impact factor: 3.688

2.  Attenuated protein expression vectors for use in siRNA rescue experiments.

Authors:  Eiji Morita; Jun Arii; Devin Christensen; Jörg Votteler; Wesley I Sundquist
Journal:  Biotechniques       Date:  2012-08       Impact factor: 1.993

Review 3.  MicroRNAs and HIV-1: complex interactions.

Authors:  Zachary Klase; Laurent Houzet; Kuan-Teh Jeang
Journal:  J Biol Chem       Date:  2012-10-05       Impact factor: 5.157

4.  Genome-wide RNAi Screening to Identify Host Factors That Modulate Oncolytic Virus Therapy.

Authors:  Kristina J Allan; Douglas J Mahoney; Stephen D Baird; Charles A Lefebvre; David F Stojdl
Journal:  J Vis Exp       Date:  2018-04-03       Impact factor: 1.355

5.  Arbovirus Infections As Screening Tools for the Identification of Viral Immunomodulators and Host Antiviral Factors.

Authors:  Emily A Rex; Dahee Seo; Don B Gammon
Journal:  J Vis Exp       Date:  2018-09-13       Impact factor: 1.355

6.  Positive selection of primate genes that promote HIV-1 replication.

Authors:  Nicholas R Meyerson; Paul A Rowley; Christina H Swan; Dona T Le; Gregory K Wilkerson; Sara L Sawyer
Journal:  Virology       Date:  2014-03-21       Impact factor: 3.616

7.  Tetraspanin CD151 Promotes Initial Events in Human Cytomegalovirus Infection.

Authors:  Daniel Hochdorfer; Luise Florin; Christian Sinzger; Diana Lieber
Journal:  J Virol       Date:  2016-06-24       Impact factor: 5.103

Review 8.  Functional genomic and high-content screening for target discovery and deconvolution.

Authors:  Susanne Heynen-Genel; Lars Pache; Sumit K Chanda; Jonathan Rosen
Journal:  Expert Opin Drug Discov       Date:  2012-08-04       Impact factor: 6.098

9.  NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression.

Authors:  Quan Zhang; Chia-Yen Chen; Venkat S R K Yedavalli; Kuan-Teh Jeang
Journal:  MBio       Date:  2013-01-29       Impact factor: 7.867

10.  Cellular cofactors of lentiviral integrase: from target validation to drug discovery.

Authors:  Oliver Taltynov; Belete A Desimmie; Jonas Demeulemeester; Frauke Christ; Zeger Debyser
Journal:  Mol Biol Int       Date:  2012-08-07
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