Literature DB >> 15516599

Cold sensitivity of thermophilic and mesophilic RNA polymerases.

A Kulbachinskiy1, I Bass, E Bogdanova, A Goldfarb, V Nikiforov.   

Abstract

RNA polymerase from mesophilic Deinococcus radiodurans displays the same cold sensitivity of promoter opening as RNA polymerase from the closely related thermophilic Thermus aquaticus. This suggests that, contrary to the accepted view, cold sensitivity of promoter opening by thermophilic RNA polymerases may not be a consequence of their thermostability.

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Year:  2004        PMID： 15516599      PMCID： PMC524896          DOI： 10.1128/JB.186.22.7818-7820.2004

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  18 in total

Review 1.  Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability.

Authors:  C Vieille; G J Zeikus
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

Review 2.  Review: Protein function at thermal extremes: balancing stability and flexibility.

Authors:  P A Fields
Journal:  Comp Biochem Physiol A Mol Integr Physiol       Date:  2001-06       Impact factor: 2.320

3.  Substrate dependent heterogeneity of initiation by RNA polymerase from thermophilic B. megaterium.

Authors:  V G. Nikiforov
Journal:  FEBS Lett       Date:  1970-09-06       Impact factor: 4.124

4.  A new method for the large scale purification of Escherichia coli deoxyribonucleic acid-dependent ribonucleic acid polymerase.

Authors:  R R Burgess
Journal:  J Biol Chem       Date:  1969-11-25       Impact factor: 5.157

5.  A procedure for the rapid, large-scall purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography.

Authors:  R R Burgess; J J Jendrisak
Journal:  Biochemistry       Date:  1975-10-21       Impact factor: 3.162

6.  Coupling between transcription termination and RNA polymerase inchworming.

Authors:  E Nudler; M Kashlev; V Nikiforov; A Goldfarb
Journal:  Cell       Date:  1995-05-05       Impact factor: 41.582

7.  Recombinant Thermus aquaticus RNA polymerase, a new tool for structure-based analysis of transcription.

Authors:  L Minakhin; S Nechaev; E A Campbell; K Severinov
Journal:  J Bacteriol       Date:  2001-01       Impact factor: 3.490

8.  Purification and initial characterization of RNA polymerase from Thermus thermophilus strain HB8.

Authors:  Y Xue; B P Hogan; D A Erie
Journal:  Biochemistry       Date:  2000-11-21       Impact factor: 3.162

9.  Utilization of promoter and terminator sites on bacteriophage T7 DNA by RNA polymerases from a variety of bacterial orders.

Authors:  J L Wiggs; J W Bush; M J Chamberlin
Journal:  Cell       Date:  1979-01       Impact factor: 41.582

10.  Distinctive protein signatures provide molecular markers and evidence for the monophyletic nature of the deinococcus-thermus phylum.

Authors:  Emma Griffiths; Radhey S Gupta
Journal:  J Bacteriol       Date:  2004-05       Impact factor: 3.490
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  13 in total

1.  Lineage-specific amino acid substitutions in region 2 of the RNA polymerase sigma subunit affect the temperature of promoter opening.

Authors:  N Barinova; E Zhilina; I Bass; V Nikiforov; A Kulbachinskiy
Journal:  J Bacteriol       Date:  2008-02-15       Impact factor: 3.490

2.  Modulation of RNA polymerase activity through the trigger loop folding.

Authors:  Nataliya Miropolskaya; Vadim Nikiforov; Saulius Klimasauskas; Irina Artsimovitch; Andrey Kulbachinskiy
Journal:  Transcription       Date:  2010 Sep-Oct

3.  Conserved functions of the trigger loop and Gre factors in RNA cleavage by bacterial RNA polymerases.

Authors:  Nataliya Miropolskaya; Daria Esyunina; Andrey Kulbachinskiy
Journal:  J Biol Chem       Date:  2017-02-27       Impact factor: 5.157

4.  Distinct functions of regions 1.1 and 1.2 of RNA polymerase σ subunits from Escherichia coli and Thermus aquaticus in transcription initiation.

Authors:  Nataliya Miropolskaya; Artem Ignatov; Irina Bass; Ekaterina Zhilina; Danil Pupov; Andrey Kulbachinskiy
Journal:  J Biol Chem       Date:  2012-05-17       Impact factor: 5.157

5.  Gre-family factors modulate DNA damage sensing by Deinococcus radiodurans RNA polymerase.

Authors:  Aleksei Agapov; Daria Esyunina; Andrey Kulbachinskiy
Journal:  RNA Biol       Date:  2019-08-21       Impact factor: 4.652

6.  Lineage-specific variations in the trigger loop modulate RNA proofreading by bacterial RNA polymerases.

Authors:  Daria Esyunina; Matti Turtola; Danil Pupov; Irina Bass; Saulius Klimašauskas; Georgiy Belogurov; Andrey Kulbachinskiy
Journal:  Nucleic Acids Res       Date:  2016-01-04       Impact factor: 16.971

7.  Structural modules of RNA polymerase required for transcription from promoters containing downstream basal promoter element GGGA.

Authors:  Nataliya Barinova; Konstantin Kuznedelov; Konstantin Severinov; Andrey Kulbachinskiy
Journal:  J Biol Chem       Date:  2008-06-23       Impact factor: 5.157

8.  Allosteric control of catalysis by the F loop of RNA polymerase.

Authors:  Nataliya Miropolskaya; Irina Artsimovitch; Saulius Klimasauskas; Vadim Nikiforov; Andrey Kulbachinskiy
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-23       Impact factor: 11.205

9.  A new basal promoter element recognized by RNA polymerase core enzyme.

Authors:  Yulia Yuzenkova; Vasisht R Tadigotla; Konstantin Severinov; Nikolay Zenkin
Journal:  EMBO J       Date:  2011-07-26       Impact factor: 11.598

10.  RNA polymerase-promoter interactions determining different stability of the Escherichia coli and Thermus aquaticus transcription initiation complexes.

Authors:  Vladimir Mekler; Leonid Minakhin; Konstantin Kuznedelov; Damir Mukhamedyarov; Konstantin Severinov
Journal:  Nucleic Acids Res       Date:  2012-10-18       Impact factor: 16.971
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