Literature DB >> 15512765

Evaluation of parallel decomposition methods for biomechanical optimizations.

Byung Il Koh1, Jeffrey A Reinbolt, Benjamin J Fregly, Alan D George.   

Abstract

As the complexity of musculoskeletal models continues to increase, so will the computational demands of biomechanical optimizations. For this reason, parallel biomechanical optimizations are becoming more common. Most implementations parallelize the optimizer. In this study, an alternate approach is investigated that parallelizes the analysis function (i.e., a kinematic or dynamic simulation) called repeatedly by the optimizer to calculate the cost function and constraints. To evaluate this approach, a system identification problem involving a kinematic ankle joint model was solved using a gradient-based optimizer and three parallel decomposition methods: gradient calculation decomposition, analysis function decomposition, or both methods combined. For a given number of processors, analysis function decomposition exhibited the best performance despite the highest communication and synchronization overhead, while gradient calculation decomposition demonstrated the worst performance due to the fact that the necessary line searches were not performed in parallel. These findings suggest that the method of parallelization most commonly used for biomechanical optimizations may not be the most efficient, depending on the optimization algorithm used. In many applications, the best computational strategy may be to focus on parallelizing the analysis function.

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Year:  2004        PMID: 15512765      PMCID: PMC1635986          DOI: 10.1080/10255840412331290398

Source DB:  PubMed          Journal:  Comput Methods Biomech Biomed Engin        ISSN: 1025-5842            Impact factor:   1.763


  12 in total

1.  Optimization algorithm performance in determining optimal controls in human movement analyses.

Authors:  R R Neptune
Journal:  J Biomech Eng       Date:  1999-04       Impact factor: 2.097

2.  Static and dynamic optimization solutions for gait are practically equivalent.

Authors:  F C Anderson; M G Pandy
Journal:  J Biomech       Date:  2001-02       Impact factor: 2.712

3.  The merits of a parallel genetic algorithm in solving hard optimization problems.

Authors:  A J Knoek van Soest; L J R Richard Casius
Journal:  J Biomech Eng       Date:  2003-02       Impact factor: 2.097

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Authors:  M G Pandy; F C Anderson; D G Hull
Journal:  J Biomech Eng       Date:  1992-11       Impact factor: 2.097

5.  Determination of patient-specific multi-joint kinematic models through two-level optimization.

Authors:  Jeffrey A Reinbolt; Jaco F Schutte; Benjamin J Fregly; Byung Il Koh; Raphael T Haftka; Alan D George; Kim H Mitchell
Journal:  J Biomech       Date:  2005-03       Impact factor: 2.712

6.  Parallel global optimization with the particle swarm algorithm.

Authors:  J F Schutte; J A Reinbolt; B J Fregly; R T Haftka; A D George
Journal:  Int J Numer Methods Eng       Date:  2004-12-07       Impact factor: 3.477

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Authors:  F C Anderson; J M Ziegler; M G Pandy; R T Whalen
Journal:  J Biomech Eng       Date:  1995-02       Impact factor: 2.097

8.  A Dynamic Optimization Solution for Vertical Jumping in Three Dimensions.

Authors:  FRANK C. Anderson; MARCUS G. Pandy
Journal:  Comput Methods Biomech Biomed Engin       Date:  1999       Impact factor: 1.763

9.  Human motion planning based on recursive dynamics and optimal control techniques.

Authors:  Janzen Lo; Gang Huang; Dimitris Metaxas
Journal:  Multibody Syst Dyn       Date:  2002-11       Impact factor: 3.109

10.  In vivo determination of the anatomical axes of the ankle joint complex: an optimization approach.

Authors:  A J van den Bogert; G D Smith; B M Nigg
Journal:  J Biomech       Date:  1994-12       Impact factor: 2.712

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  3 in total

1.  Parallel asynchronous particle swarm optimization.

Authors:  Byung-Il Koh; Alan D George; Raphael T Haftka; Benjamin J Fregly
Journal:  Int J Numer Methods Eng       Date:  2006-07-23       Impact factor: 3.477

2.  Evaluation of a particle swarm algorithm for biomechanical optimization.

Authors:  Jaco F Schutte; Byung-Il Koh; Jeffrey A Reinbolt; Raphael T Haftka; Alan D George; Benjamin J Fregly
Journal:  J Biomech Eng       Date:  2005-06       Impact factor: 2.097

3.  Limitations of parallel global optimization for large-scale human movement problems.

Authors:  Byung-Il Koh; Jeffrey A Reinbolt; Alan D George; Raphael T Haftka; Benjamin J Fregly
Journal:  Med Eng Phys       Date:  2008-11-25       Impact factor: 2.242

  3 in total

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