Literature DB >> 15507684

One-step random mutagenesis by error-prone rolling circle amplification.

Ryota Fujii1, Motomitsu Kitaoka, Kiyoshi Hayashi.   

Abstract

In vitro random mutagenesis is a powerful tool for altering properties of enzymes. We describe here a novel random mutagenesis method using rolling circle amplification, named error-prone RCA. This method consists of only one DNA amplification step followed by transformation of the host strain, without treatment with any restriction enzymes or DNA ligases, and results in a randomly mutated plasmid library with 3-4 mutations per kilobase. Specific primers or special equipment, such as a thermal-cycler, are not required. This method permits rapid preparation of randomly mutated plasmid libraries, enabling random mutagenesis to become a more commonly used technique.

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Year:  2004        PMID: 15507684      PMCID: PMC528823          DOI: 10.1093/nar/gnh147

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  16 in total

1.  Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification.

Authors:  F B Dean; J R Nelson; T L Giesler; R S Lasken
Journal:  Genome Res       Date:  2001-06       Impact factor: 9.043

Review 2.  Discovery of superior enzymes by directed molecular evolution.

Authors:  S Brakmann
Journal:  Chembiochem       Date:  2001-12-03       Impact factor: 3.164

3.  A standard numbering scheme for the class A beta-lactamases.

Authors:  R P Ambler; A F Coulson; J M Frère; J M Ghuysen; B Joris; M Forsman; R C Levesque; G Tiraby; S G Waley
Journal:  Biochem J       Date:  1991-05-15       Impact factor: 3.857

Review 4.  How enzymes adapt: lessons from directed evolution.

Authors:  F H Arnold; P L Wintrode; K Miyazaki; A Gershenson
Journal:  Trends Biochem Sci       Date:  2001-02       Impact factor: 13.807

5.  Mutation detection and single-molecule counting using isothermal rolling-circle amplification.

Authors:  P M Lizardi; X Huang; Z Zhu; P Bray-Ward; D C Thomas; D C Ward
Journal:  Nat Genet       Date:  1998-07       Impact factor: 38.330

6.  Generation of large libraries of random mutants in Bacillus subtilis by PCR-based plasmid multimerization.

Authors:  S Shafikhani; R A Siegel; E Ferrari; V Schellenberger
Journal:  Biotechniques       Date:  1997-08       Impact factor: 1.993

7.  Directed evolution of an esterase for the stereoselective resolution of a key intermediate in the synthesis of epothilones.

Authors:  U T Bornscheuer; J Altenbuchner; H H Meyer
Journal:  Biotechnol Bioeng       Date:  1998-06-05       Impact factor: 4.530

8.  Directed evolution of an esterase from Pseudomonas fluorescens. Random mutagenesis by error-prone PCR or a mutator strain and identification of mutants showing enhanced enantioselectivity by a resorufin-based fluorescence assay.

Authors:  E Henke; U T Bornscheuer
Journal:  Biol Chem       Date:  1999 Jul-Aug       Impact factor: 3.915

9.  Phage phi 29 DNA polymerase residues involved in the proper stabilisation of the primer-terminus at the 3'-5' exonuclease active site.

Authors:  M de Vega; J M Lázaro; M Salas
Journal:  J Mol Biol       Date:  2000-11-17       Impact factor: 5.469

10.  Novel ceftazidime-resistance beta-lactamases generated by a codon-based mutagenesis method and selection.

Authors:  Paul Gaytán; Joel Osuna; Xavier Soberón
Journal:  Nucleic Acids Res       Date:  2002-08-15       Impact factor: 16.971

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  21 in total

1.  Simple cloning via direct transformation of PCR product (DNA Multimer) to Escherichia coli and Bacillus subtilis.

Authors:  Chun You; Xiao-Zhou Zhang; Y-H Percival Zhang
Journal:  Appl Environ Microbiol       Date:  2011-12-22       Impact factor: 4.792

2.  Improvement of φ29 DNA polymerase amplification performance by fusion of DNA binding motifs.

Authors:  Miguel de Vega; José M Lázaro; Mario Mencía; Luis Blanco; Margarita Salas
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-07       Impact factor: 11.205

3.  The growth-promoting and stress response activities of the Bacillus subtilis GTP binding protein Obg are separable by mutation.

Authors:  Shrin Kuo; Borries Demeler; W G Haldenwang
Journal:  J Bacteriol       Date:  2008-08-08       Impact factor: 3.490

Review 4.  An Overview on the Enhancement of Enantioselectivity and Stability of Microbial Epoxide Hydrolases.

Authors:  Priya Saini; Dipti Sareen
Journal:  Mol Biotechnol       Date:  2017-03       Impact factor: 2.695

Review 5.  Modern methods for laboratory diversification of biomolecules.

Authors:  Sinisa Bratulic; Ahmed H Badran
Journal:  Curr Opin Chem Biol       Date:  2017-11-02       Impact factor: 8.822

6.  Improving toxicity of Bacillus thuringiensis strain contains the cry8Ca gene specific to Anomala corpulenta larvae.

Authors:  C Shu; R Liu; R Wang; J Zhang; S Feng; D Huang; F Song
Journal:  Curr Microbiol       Date:  2007-09-06       Impact factor: 2.188

7.  Novel Synthesis and Phenotypic Analysis of Mutant Clouds for Hepatitis E Virus Genotype 1.

Authors:  Shubhra Agarwal; Prasith Baccam; Rakesh Aggarwal; Naga Suresh Veerapu
Journal:  J Virol       Date:  2018-01-30       Impact factor: 5.103

8.  Network models of TEM β-lactamase mutations coevolving under antibiotic selection show modular structure and anticipate evolutionary trajectories.

Authors:  Violeta Beleva Guthrie; Jennifer Allen; Manel Camps; Rachel Karchin
Journal:  PLoS Comput Biol       Date:  2011-09-22       Impact factor: 4.475

9.  Conditional gene silencing of multiple genes with antisense RNAs and generation of a mutator strain of Escherichia coli.

Authors:  Nobutaka Nakashima; Tomohiro Tamura
Journal:  Nucleic Acids Res       Date:  2009-06-10       Impact factor: 16.971

Review 10.  Phage display-based strategies for cloning and optimization of monoclonal antibodies directed against human pathogens.

Authors:  Nicola Clementi; Nicasio Mancini; Laura Solforosi; Matteo Castelli; Massimo Clementi; Roberto Burioni
Journal:  Int J Mol Sci       Date:  2012-07-04       Impact factor: 6.208

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