Literature DB >> 11381035

Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification.

F B Dean1, J R Nelson, T L Giesler, R S Lasken.   

Abstract

We describe a simple method of using rolling circle amplification to amplify vector DNA such as M13 or plasmid DNA from single colonies or plaques. Using random primers and phi29 DNA polymerase, circular DNA templates can be amplified 10,000-fold in a few hours. This procedure removes the need for lengthy growth periods and traditional DNA isolation methods. Reaction products can be used directly for DNA sequencing after phosphatase treatment to inactivate unincorporated nucleotides. Amplified products can also be used for in vitro cloning, library construction, and other molecular biology applications.

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Year:  2001        PMID: 11381035      PMCID: PMC311129          DOI: 10.1101/gr.180501

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  6 in total

1.  Rolling Circle DNA Synthesis: Small Circular Oligonucleotides as Efficient Templates for DNA Polymerases.

Authors:  Dongyu Liu; Sarah L Daubendiek; Martin A Zillman; Kevin Ryan; Eric T Kool
Journal:  J Am Chem Soc       Date:  1996-02-21       Impact factor: 15.419

2.  Signal amplification of padlock probes by rolling circle replication.

Authors:  J Banér; M Nilsson; M Mendel-Hartvig; U Landegren
Journal:  Nucleic Acids Res       Date:  1998-11-15       Impact factor: 16.971

3.  Mutation detection and single-molecule counting using isothermal rolling-circle amplification.

Authors:  P M Lizardi; X Huang; Z Zhu; P Bray-Ward; D C Thomas; D C Ward
Journal:  Nat Genet       Date:  1998-07       Impact factor: 38.330

4.  Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication.

Authors:  L Blanco; A Bernad; J M Lázaro; G Martín; C Garmendia; M Salas
Journal:  J Biol Chem       Date:  1989-05-25       Impact factor: 5.157

5.  Rolling replication of short DNA circles.

Authors:  A Fire; S Q Xu
Journal:  Proc Natl Acad Sci U S A       Date:  1995-05-09       Impact factor: 11.205

6.  Fidelity of phi 29 DNA polymerase. Comparison between protein-primed initiation and DNA polymerization.

Authors:  J A Esteban; M Salas; L Blanco
Journal:  J Biol Chem       Date:  1993-02-05       Impact factor: 5.157

  6 in total
  346 in total

1.  Comprehensive human genome amplification using multiple displacement amplification.

Authors:  Frank B Dean; Seiyu Hosono; Linhua Fang; Xiaohong Wu; A Fawad Faruqi; Patricia Bray-Ward; Zhenyu Sun; Qiuling Zong; Yuefen Du; Jing Du; Mark Driscoll; Wanmin Song; Stephen F Kingsmore; Michael Egholm; Roger S Lasken
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

2.  Quantitative evaluation by minisequencing and microarrays reveals accurate multiplexed SNP genotyping of whole genome amplified DNA.

Authors:  Lovisa Lovmar; Mona Fredriksson; Ulrika Liljedahl; Snaevar Sigurdsson; Ann-Christine Syvänen
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

3.  Selective DNA amplification from complex genomes using universal double-sided adapters.

Authors:  Matthew J Callow; Snezana Drmanac; Radoje Drmanac
Journal:  Nucleic Acids Res       Date:  2004-01-28       Impact factor: 16.971

4.  TempliPhi: A sequencing template preparation procedure that eliminates overnight cultures and DNA purification.

Authors:  Michael J Reagin; Theresa L Giesler; Alia L Merla; Jeanine M Resetar-Gerke; Kinga M Kapolka; J Anthony Mamone
Journal:  J Biomol Tech       Date:  2003-06

5.  Capillary DNA sequencing: maximizing the sequence output.

Authors:  Ernesto C Almira; Nedka Panayotova; William G Farmerie
Journal:  J Biomol Tech       Date:  2003-12

6.  NotI passporting to identify species composition of complex microbial systems.

Authors:  Veronika Zabarovska; Alexey S Kutsenko; Lev Petrenko; Gelena Kilosanidze; Olle Ljungqvist; Elisabeth Norin; Tore Midtvedt; Gösta Winberg; Roland Möllby; Vladimir I Kashuba; Ingemar Ernberg; Eugene R Zabarovsky
Journal:  Nucleic Acids Res       Date:  2003-01-15       Impact factor: 16.971

7.  Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH.

Authors:  José M Lage; John H Leamon; Tanja Pejovic; Stefan Hamann; Michelle Lacey; Deborah Dillon; Richard Segraves; Bettina Vossbrinck; Antonio González; Daniel Pinkel; Donna G Albertson; Jose Costa; Paul M Lizardi
Journal:  Genome Res       Date:  2003-02       Impact factor: 9.043

8.  Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel.

Authors:  David L Barker; Mark S T Hansen; A Fawad Faruqi; Diane Giannola; Orlando R Irsula; Roger S Lasken; Martin Latterich; Vladimir Makarov; Arnold Oliphant; Jonathon H Pinter; Richard Shen; Irina Sleptsova; William Ziehler; Eric Lai
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

9.  Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification.

Authors:  J Guillermo Paez; Ming Lin; Rameen Beroukhim; Jeffrey C Lee; Xiaojun Zhao; Daniel J Richter; Stacey Gabriel; Paula Herman; Hidefumi Sasaki; David Altshuler; Cheng Li; Matthew Meyerson; William R Sellers
Journal:  Nucleic Acids Res       Date:  2004-05-18       Impact factor: 16.971

10.  Dissecting genomic diversity, one cell at a time.

Authors:  Paul C Blainey; Stephen R Quake
Journal:  Nat Methods       Date:  2014-01       Impact factor: 28.547

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