Literature DB >> 15505406

High chromosome conservation detected by comparative chromosome painting in chicken, pigeon and passerine birds.

Svetlana Derjusheva1, Anna Kurganova, Felix Habermann, Elena Gaginskaya.   

Abstract

Chicken chromosome paints for macrochromosomes 1-10, Z, and the nine largest microchromosomes (Griffin et al. 1999) were used to analyze chromosome homologies between chicken (Gallus gallus domesticus: Galliformes), domestic pigeon (Columba livia: Columbiformes), chaffinch (Fringilla coelebs Passeriformes), and redwing (Turdus iliacus: Passeriformes). High conservation of syntenies was revealed. In general, both macro- and microchromosomes in these birds showed very low levels of interchromosomal rearrangements. Only two cases of rearrangements were found. Chicken chromosome 1 corresponds to chromosome 1 in pigeon, but to chromosomes 3 and 4 in chaffinch and chromosomes 2 and 5 in redwing. Chicken chromosome 4 was shown to be homologous to two pairs of chromosomes in the karyotypes of pigeon and both passerine species. Comparative analysis of chromosome painting data and the results of FISH with (TTAGGG)n probe did not reveal any correlation between the distribution of interstitial telomere sites (ITSs) and chromosome rearrangements in pigeon, chaffinch and redwing. In chaffinch, ITSs were found to co-localize with a tandem repeat GS (Liangouzov et al. 2002), monomers of which contain an internal TTAGGG motif.

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Year:  2004        PMID: 15505406     DOI: 10.1023/B:CHRO.0000045779.50641.00

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  37 in total

1.  Micro- and macrochromosome paints generated by flow cytometry and microdissection: tools for mapping the chicken genome.

Authors:  D K Griffin; F Haberman; J Masabanda; P O'Brien; M Bagga; A Sazanov; J Smith; D W Burt; M Ferguson-Smith; J Wienberg
Journal:  Cytogenet Cell Genet       Date:  1999

2.  Interstitial colocalization of two cervid satellite DNAs involved in the genesis of the Indian muntjac karyotype.

Authors:  Y C Li; C Lee; D Sanoudou; T H Hseu; S Y Li; C C Lin; T H Hsu
Journal:  Chromosome Res       Date:  2000       Impact factor: 5.239

3.  Distribution of telomeric (TTAGGG)(n) sequences in avian chromosomes.

Authors:  Indrajit Nanda; David Schrama; Wolfgang Feichtinger; Thomas Haaf; Manfred Schartl; Michael Schmid
Journal:  Chromosoma       Date:  2002-09-24       Impact factor: 4.316

4.  Comparative chromosome painting of chicken autosomal paints 1-9 in nine different bird species.

Authors:  M Guttenbach; I Nanda; W Feichtinger; J S Masabanda; D K Griffin; M Schmid
Journal:  Cytogenet Genome Res       Date:  2003       Impact factor: 1.636

5.  Comparative painting reveals strong chromosome homology over 80 million years of bird evolution.

Authors:  S Shetty; D K Griffin; J A Graves
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

6.  Characterization and organization of DNA sequences adjacent to the human telomere associated repeat (TTAGGG)n.

Authors:  B Weber; C Collins; C Robbins; R E Magenis; A D Delaney; J W Gray; M R Hayden
Journal:  Nucleic Acids Res       Date:  1990-06-11       Impact factor: 16.971

7.  Localization of the telomeric (TTAGGG)n sequence in chicken (Gallus domesticus) chromosomes.

Authors:  I Nanda; M Schmid
Journal:  Cytogenet Cell Genet       Date:  1994

8.  Chromosome rearrangements between chicken and guinea fowl defined by comparative chromosome painting and FISH mapping of DNA clones.

Authors:  M Shibusawa; C Nishida-Umehara; J Masabanda; D K Griffin; T Isobe; Y Matsuda
Journal:  Cytogenet Genome Res       Date:  2002       Impact factor: 1.636

9.  Mapping the distribution of the interstitial telomeric (TTAGGG)n sequences in eight species of Brazilian marsupials (Didelphidae) by FISH and the correlation with constitutive heterochromatin. Do ITS represent evidence for fusion events in American marsupials?

Authors:  J M Pagnozzi; A D Ditchfield; Y Yonenaga-Yassuda
Journal:  Cytogenet Genome Res       Date:  2002       Impact factor: 1.636

10.  Telomeric (TTAGGG)n sequences are associated with nucleolus organizer regions (NORs) in the wood lemming.

Authors:  W S Liu; K Fredga
Journal:  Chromosome Res       Date:  1999       Impact factor: 4.620

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  45 in total

1.  Comparative chromosome painting in Columbidae (Columbiformes) reinforces divergence in Passerea and Columbea.

Authors:  Rafael Kretschmer; Ivanete de Oliveira Furo; Ricardo José Gunski; Analía Del Valle Garnero; Jorge C Pereira; Patricia C M O'Brien; Malcolm A Ferguson-Smith; Edivaldo Herculano Corrêa de Oliveira; Thales Renato Ochotorena de Freitas
Journal:  Chromosome Res       Date:  2018-06-07       Impact factor: 5.239

2.  Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes.

Authors:  Stephen R Voss; D Kevin Kump; Srikrishna Putta; Nathan Pauly; Anna Reynolds; Rema J Henry; Saritha Basa; John A Walker; Jeramiah J Smith
Journal:  Genome Res       Date:  2011-04-11       Impact factor: 9.043

3.  Comparative cytogenomics of poultry: mapping of single gene and repeat loci in the Japanese quail (Coturnix japonica).

Authors:  Marla C McPherson; Charmaine M Robinson; Lida P Gehlen; Mary E Delany
Journal:  Chromosome Res       Date:  2014-04       Impact factor: 5.239

4.  Avian comparative genomics: reciprocal chromosome painting between domestic chicken (Gallus gallus) and the stone curlew (Burhinus oedicnemus, Charadriiformes)--an atypical species with low diploid number.

Authors:  Wenhui Nie; Patricia C M O'Brien; Bee L Ng; Beiyuan Fu; Vitaly Volobouev; Nigel P Carter; Malcolm A Ferguson-Smith; Fengtang Yang
Journal:  Chromosome Res       Date:  2009-01-27       Impact factor: 5.239

5.  Relationship between physical and genetic distances along the zebra finch Z chromosome.

Authors:  María Inés Pigozzi
Journal:  Chromosome Res       Date:  2008-08-02       Impact factor: 5.239

6.  A gene-based genetic linkage map of the collared flycatcher (Ficedula albicollis) reveals extensive synteny and gene-order conservation during 100 million years of avian evolution.

Authors:  Niclas Backström; Nikoletta Karaiskou; Erica H Leder; Lars Gustafsson; Craig R Primmer; Anna Qvarnström; Hans Ellegren
Journal:  Genetics       Date:  2008-06-18       Impact factor: 4.562

7.  The chromosomal polymorphism linked to variation in social behavior in the white-throated sparrow (Zonotrichia albicollis) is a complex rearrangement and suppressor of recombination.

Authors:  James W Thomas; Mario Cáceres; Joshua J Lowman; Caroline B Morehouse; Meghan E Short; Erin L Baldwin; Donna L Maney; Christa L Martin
Journal:  Genetics       Date:  2008-06-18       Impact factor: 4.562

8.  A comparison of SNPs and microsatellites as linkage mapping markers: lessons from the zebra finch (Taeniopygia guttata).

Authors:  Alexander D Ball; Jessica Stapley; Deborah A Dawson; Tim R Birkhead; Terry Burke; Jon Slate
Journal:  BMC Genomics       Date:  2010-04-01       Impact factor: 3.969

9.  Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation.

Authors:  Chizuko Nishida; Junko Ishijima; Ayumi Kosaka; Hideyuki Tanabe; Felix A Habermann; Darren K Griffin; Yoichi Matsuda
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

10.  A first-generation microsatellite-based genetic linkage map of the Siberian jay (Perisoreus infaustus): insights into avian genome evolution.

Authors:  Sonja Jaari; Meng-Hua Li; Juha Merilä
Journal:  BMC Genomics       Date:  2009-01-03       Impact factor: 3.969

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