Literature DB >> 29882066

Comparative chromosome painting in Columbidae (Columbiformes) reinforces divergence in Passerea and Columbea.

Rafael Kretschmer1,2, Ivanete de Oliveira Furo3, Ricardo José Gunski4, Analía Del Valle Garnero4, Jorge C Pereira5, Patricia C M O'Brien5, Malcolm A Ferguson-Smith5, Edivaldo Herculano Corrêa de Oliveira6,7, Thales Renato Ochotorena de Freitas8.   

Abstract

Pigeons and doves (Columbiformes) are one of the oldest and most diverse extant lineages of birds. However, the karyotype evolution within Columbiformes remains unclear. To delineate the synteny-conserved segments and karyotypic differences among four Columbidae species, we used chromosome painting from Gallus gallus (GGA, 2n = 78) and Leucopternis albicollis (LAL, 2n = 68). Besides that, a set of painting probes for the eared dove, Zenaida auriculata (ZAU, 2n = 76), was generated from flow-sorted chromosomes. Chromosome painting with GGA and ZAU probes showed conservation of the first ten ancestral pairs in Z. auriculata, Columba livia, and Columbina picui, while in Leptotila verreauxi, fusion of the ancestral chromosomes 6 and 7 was observed. However, LAL probes revealed a complex reorganization of ancestral chromosome 1, involving paracentric and pericentric inversions. Because of the presence of similar intrachromosomal rearrangements in the chromosomes corresponding to GGA1q in the Columbidae and Passeriformes species but without a common origin, these results are consistent with the recent proposal of divergence within Neoaves (Passerea and Columbea). In addition, inversions in chromosome 2 were identified in C. picui and L. verreauxi. Thus, in four species of distinct genera of the Columbidae family, unique chromosomal rearrangements have occurred during karyotype evolution, confirming that despite conservation of the ancestral syntenic groups, these chromosomes have been modified by the occurrence of intrachromosomal rearrangements.

Entities:  

Keywords:  Ancestral karyotype of Columbiformes; Birds cytogenetics; Chromosome evolution; FISH

Mesh:

Year:  2018        PMID: 29882066     DOI: 10.1007/s10577-018-9580-5

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  32 in total

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Authors:  M Guttenbach; I Nanda; W Feichtinger; J S Masabanda; D K Griffin; M Schmid
Journal:  Cytogenet Genome Res       Date:  2003       Impact factor: 1.636

2.  Mitochondrial and nuclear DNA sequences support a Cretaceous origin of Columbiformes and a dispersal-driven radiation in the Paleocene .

Authors:  Sergio L Pereira; Kevin P Johnson; Dale H Clayton; Allan J Baker
Journal:  Syst Biol       Date:  2007-08       Impact factor: 15.683

3.  Chromosome Painting in Trogon s. surrucura (Aves, Trogoniformes) Reveals a Karyotype Derived by Chromosomal Fissions, Fusions, and Inversions.

Authors:  Tiago M Degrandi; Analía Del Valle Garnero; Patricia C M O'Brien; Malcolm A Ferguson-Smith; Rafael Kretschmer; Edivaldo H C de Oliveira; Ricardo J Gunski
Journal:  Cytogenet Genome Res       Date:  2017-05-13       Impact factor: 1.636

4.  Behavioural changes and the adaptive diversification of pigeons and doves.

Authors:  Oriol Lapiedra; Daniel Sol; Salvador Carranza; Jeremy M Beaulieu
Journal:  Proc Biol Sci       Date:  2013-01-30       Impact factor: 5.349

Review 5.  Centromere repositioning in mammals.

Authors:  M Rocchi; N Archidiacono; W Schempp; O Capozzi; R Stanyon
Journal:  Heredity (Edinb)       Date:  2011-11-02       Impact factor: 3.821

6.  High chromosome conservation detected by comparative chromosome painting in chicken, pigeon and passerine birds.

Authors:  Svetlana Derjusheva; Anna Kurganova; Felix Habermann; Elena Gaginskaya
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

7.  Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes.

Authors:  H Telenius; A H Pelmear; A Tunnacliffe; N P Carter; A Behmel; M A Ferguson-Smith; M Nordenskjöld; R Pfragner; B A Ponder
Journal:  Genes Chromosomes Cancer       Date:  1992-04       Impact factor: 5.006

8.  A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing.

Authors:  Richard O Prum; Jacob S Berv; Alex Dornburg; Daniel J Field; Jeffrey P Townsend; Emily Moriarty Lemmon; Alan R Lemmon
Journal:  Nature       Date:  2015-10-07       Impact factor: 49.962

9.  Cytotaxonomy of Eurypyga helias (Gruiformes, Eurypygidae): First Karyotypic Description and Phylogenetic Proximity with Rynochetidae.

Authors:  Ivanete de Oliveira Furo; Amanda Almeida Monte; Michelly da Silva dos Santos; Marcella Mergulhão Tagliarini; Patricia C M O'Brien; Malcolm A Ferguson-Smith; Edivaldo H C de Oliveira
Journal:  PLoS One       Date:  2015-12-01       Impact factor: 3.240

10.  Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set.

Authors:  Joana Damas; Rebecca O'Connor; Marta Farré; Vasileios Panagiotis E Lenis; Henry J Martell; Anjali Mandawala; Katie Fowler; Sunitha Joseph; Martin T Swain; Darren K Griffin; Denis M Larkin
Journal:  Genome Res       Date:  2016-11-30       Impact factor: 9.043

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  7 in total

1.  Establishment of the Primary Avian Gonadal Somatic Cell Lines for Cytogenetic Studies.

Authors:  Inna E Pristyazhnyuk; Lyubov P Malinovskaya; Pavel M Borodin
Journal:  Animals (Basel)       Date:  2022-07-04       Impact factor: 3.231

2.  Chromosomal Evolution in the Phylogenetic Context: A Remarkable Karyotype Reorganization in Neotropical Parrot Myiopsitta monachus (Psittacidae).

Authors:  Ivanete de Oliveira Furo; Rafael Kretschmer; Patricia Caroline O'Brien; Jorge C Pereira; Analía Del Valle Garnero; Ricardo José Gunski; Rebecca E O'Connor; Darren Karl Griffin; Anderson José Baia Gomes; Malcolm Andrew Ferguson-Smith; Edivaldo Herculano Correa de Oliveira
Journal:  Front Genet       Date:  2020-07-10       Impact factor: 4.599

3.  A Comprehensive Cytogenetic Analysis of Several Members of the Family Columbidae (Aves, Columbiformes).

Authors:  Rafael Kretschmer; Ivanete de Oliveira Furo; Anderson José Baia Gomes; Lucas G Kiazim; Ricardo José Gunski; Analía Del Valle Garnero; Jorge C Pereira; Malcolm A Ferguson-Smith; Edivaldo Herculano Corrêa de Oliveira; Darren K Griffin; Thales Renato Ochotorena de Freitas; Rebecca E O'Connor
Journal:  Genes (Basel)       Date:  2020-06-08       Impact factor: 4.096

4.  Comparative analyses of three swallow species (Aves, Passeriformes, Hirundinidae): Insights on karyotype evolution and genomic organization.

Authors:  Suziane Alves Barcellos; Rafael Kretschmer; Marcelo Santos de Souza; Alice Lemos Costa; Tiago Marafiga Degrandi; Cassiane Furlan Lopes; Malcolm A Ferguson-Smith; Jorge Pereira; Edivaldo Herculano Correa de Oliveira; Ricardo José Gunski; Analía Del Valle Garnero
Journal:  Genet Mol Biol       Date:  2020-03-09       Impact factor: 1.771

Review 5.  Bridging the Gap between Vertebrate Cytogenetics and Genomics with Single-Chromosome Sequencing (ChromSeq).

Authors:  Alessio Iannucci; Alexey I Makunin; Artem P Lisachov; Claudio Ciofi; Roscoe Stanyon; Marta Svartman; Vladimir A Trifonov
Journal:  Genes (Basel)       Date:  2021-01-19       Impact factor: 4.096

6.  Analysis of multiple chromosomal rearrangements in the genome of Willisornis vidua using BAC-FISH and chromosome painting on a supposed conserved karyotype.

Authors:  Talita Fernanda Augusto Ribas; Julio Cesar Pieczarka; Darren K Griffin; Lucas G Kiazim; Cleusa Yoshiko Nagamachi; Patricia Caroline Mary O Brien; Malcolm Andrew Ferguson-Smith; Fengtang Yang; Alexandre Aleixo; Rebecca E O'Connor
Journal:  BMC Ecol Evol       Date:  2021-03-02

7.  Chromosome Painting in Neotropical Long- and Short-Tailed Parrots (Aves, Psittaciformes): Phylogeny and Proposal for a Putative Ancestral Karyotype for Tribe Arini.

Authors:  Ivanete de Oliveira Furo; Rafael Kretschmer; Patrícia C M O'Brien; Jorge C Pereira; Analía Del Valle Garnero; Ricardo J Gunski; Malcolm A Ferguson-Smith; Edivaldo Herculano Corrêa de Oliveira
Journal:  Genes (Basel)       Date:  2018-10-10       Impact factor: 4.096

  7 in total

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