Literature DB >> 1549460

Analysis of complex genetic systems by ARMS-SSCP: application to HLA genotyping.

Y M Lo1, P Patel, W Z Mehal, K A Fleming, J I Bell, J S Wainscoat.   

Abstract

We have developed a new method for analysis of complex genetic systems by a combination of the Amplification Refractory Mutation System (ARMS) and Single-Strand Conformation Polymorphism (SSCP) analysis: ARMS-SSCP. Thus, a complex allelic series is subdivided into a number of groups by ARMS followed by the identification of specific alleles using SSCP analysis. We have shown that the HLA alleles at the DRB3 and DQB1 loci were distinguishable from each other using ARMS-SSCP. In 36 individuals typed for the DRB3 and 48 individuals typed for the DQB1 loci, ARMS-SSCP results were in complete agreement with those obtained using the established method of sequence-specific oligonucleotide (SSO) hybridisation. With silver staining, ARMS-SSCP is a rapid, non-radioactive and reliable method which also offers the possibility for detecting new HLA alleles. We have demonstrated that ARMS-SSCP can be performed using fluorescent PCR primers, a feature which gives the method potential for automation.

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Year:  1992        PMID: 1549460      PMCID: PMC312083          DOI: 10.1093/nar/20.5.1005

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  24 in total

1.  Diagnostic single strand conformational polymorphism, (SSCP): a simplified non-radioisotopic method as applied to a Tay-Sachs B1 variant.

Authors:  P J Ainsworth; L C Surh; M B Coulter-Mackie
Journal:  Nucleic Acids Res       Date:  1991-01-25       Impact factor: 16.971

2.  Rapid typing of HLA-DQB1 DNA polymorphism using nonradioactive oligonucleotide probes and amplified DNA.

Authors:  T L Bugawan; H A Erlich
Journal:  Immunogenetics       Date:  1991       Impact factor: 2.846

3.  HLA typing by double ARMS.

Authors:  Y M Lo; W Z Mehal; B P Wordsworth; R W Chapman; K A Fleming; J I Bell; J S Wainscoat
Journal:  Lancet       Date:  1991-07-06       Impact factor: 79.321

4.  Subdural blood patch for spinal headache.

Authors:  T R Shantha; J Bisese
Journal:  N Engl J Med       Date:  1991-10-24       Impact factor: 91.245

5.  Direct haplotype determination by double ARMS: specificity, sensitivity and genetic applications.

Authors:  Y M Lo; P Patel; C R Newton; A F Markham; K A Fleming; J S Wainscoat
Journal:  Nucleic Acids Res       Date:  1991-07-11       Impact factor: 16.971

6.  Association of primary sclerosing cholangitis with HLA-DRw52a.

Authors:  E J Prochazka; P I Terasaki; M S Park; L I Goldstein; R W Busuttil
Journal:  N Engl J Med       Date:  1990-06-28       Impact factor: 91.245

7.  Analysis of enzymatically amplified beta-globin and HLA-DQ alpha DNA with allele-specific oligonucleotide probes.

Authors:  R K Saiki; T L Bugawan; G T Horn; K B Mullis; H A Erlich
Journal:  Nature       Date:  1986 Nov 13-19       Impact factor: 49.962

8.  HLA-DQ beta gene contributes to susceptibility and resistance to insulin-dependent diabetes mellitus.

Authors:  J A Todd; J I Bell; H O McDevitt
Journal:  Nature       Date:  1987 Oct 15-21       Impact factor: 49.962

9.  High risk of squamous cell carcinoma of the cervix for women with HLA-DQw3.

Authors:  R Wank; C Thomssen
Journal:  Nature       Date:  1991-08-22       Impact factor: 49.962

10.  Evidence for a primary association of celiac disease to a particular HLA-DQ alpha/beta heterodimer.

Authors:  L M Sollid; G Markussen; J Ek; H Gjerde; F Vartdal; E Thorsby
Journal:  J Exp Med       Date:  1989-01-01       Impact factor: 14.307

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  6 in total

Review 1.  Automated mutation analysis.

Authors:  D Ravine
Journal:  J Inherit Metab Dis       Date:  1999-06       Impact factor: 4.982

2.  Rapid HLA typing by multiplex amplification refractory mutation system.

Authors:  P Patel; Y M Lo; J I Bell; J S Wainscoat
Journal:  J Clin Pathol       Date:  1993-12       Impact factor: 3.411

Review 3.  "Worldwide Network for Blood & Marrow Transplantation (WBMT) special article, challenges facing emerging alternate donor registries".

Authors:  Mahmoud Aljurf; Daniel Weisdorf; Feras Alfraih; Jeff Szer; Carlheinz Müller; Dennis Confer; Shahrukh Hashmi; Nicolaus Kröger; Bronwen E Shaw; Hildegard Greinix; Mohamed A Kharfan-Dabaja; Lydia Foeken; Adriana Seber; Syed Ahmed; Areej El-Jawahri; Moheeb Al-Awwami; Yoshiko Atsuta; Marcelo Pasquini; Amr Hanbali; Hazzaa Alzahrani; Shinichiro Okamoto; Eliane Gluckman; Mohamad Mohty; Yoshihisa Kodera; Mary Horowitz; Dietger Niederwieser; Riad El Fakih
Journal:  Bone Marrow Transplant       Date:  2019-02-18       Impact factor: 5.483

4.  Distributions of HLA-A and -B alleles and haplotypes in the Yi ethnic minority of Yunnan, China: relationship to other populations.

Authors:  Bo-feng Zhu; Guang Yang; Chun-mei Shen; Hai-xia Qin; Shun-zhi Liu; Ya-jun Deng; Shuan-liang Fan; Li-bin Deng; Feng Chen; Ping Zhang; Jie Fang; Li-ping Chen; Hong-dan Wang; Zhen-yuan Wang; Rudolf Lucas
Journal:  J Zhejiang Univ Sci B       Date:  2010-02       Impact factor: 3.066

5.  Molecular analysis of HLA-DQB1 alleles in childhood common acute lymphoblastic leukaemia.

Authors:  S P Dearden; G M Taylor; D A Gokhale; M D Robinson; W Thompson; W Ollier; A Binchy; J M Birch; R F Stevens; T Carr; W G Bardsley
Journal:  Br J Cancer       Date:  1996-03       Impact factor: 7.640

6.  An analysis of HLA-A, -B, and -DRB1 allele and haplotype frequencies of 21,918 residents living in Liaoning, China.

Authors:  Xiao-Feng Li; Xu Zhang; Yang Chen; Kun-Lian Zhang; Xiang-Jun Liu; Jian-Ping Li
Journal:  PLoS One       Date:  2014-04-01       Impact factor: 3.240

  6 in total

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