Literature DB >> 15489343

Generation of the Brucella melitensis ORFeome version 1.1.

Amélie Dricot1, Jean-François Rual, Philippe Lamesch, Nicolas Bertin, Denis Dupuy, Tong Hao, Christophe Lambert, Régis Hallez, Jean-Marc Delroisse, Jean Vandenhaute, Ignacio Lopez-Goñi, Ignacio Moriyon, Juan M Garcia-Lobo, Félix J Sangari, Alastair P Macmillan, Sally J Cutler, Adrian M Whatmore, Stephanie Bozak, Reynaldo Sequerra, Lynn Doucette-Stamm, Marc Vidal, David E Hill, Jean-Jacques Letesson, Xavier De Bolle.   

Abstract

The bacteria of the Brucella genus are responsible for a worldwide zoonosis called brucellosis. They belong to the alpha-proteobacteria group, as many other bacteria that live in close association with a eukaryotic host. Importantly, the Brucellae are mainly intracellular pathogens, and the molecular mechanisms of their virulence are still poorly understood. Using the complete genome sequence of Brucella melitensis, we generated a database of protein-coding open reading frames (ORFs) and constructed an ORFeome library of 3091 Gateway Entry clones, each containing a defined ORF. This first version of the Brucella ORFeome (v1.1) provides the coding sequences in a user-friendly format amenable to high-throughput functional genomic and proteomic experiments, as the ORFs are conveniently transferable from the Entry clones to various Expression vectors by recombinational cloning. The cloning of the Brucella ORFeome v1.1 should help to provide a better understanding of the molecular mechanisms of virulence, including the identification of bacterial protein-protein interactions, but also interactions between bacterial effectors and their host's targets.

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Year:  2004        PMID: 15489343      PMCID: PMC528937          DOI: 10.1101/gr.2456204

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  37 in total

1.  Brucella melitensis: a nasty bug with hidden credentials for virulence.

Authors:  Edgardo Moreno; Ignacio Moriyon
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-08       Impact factor: 11.205

Review 2.  Regulation of Brucella virulence by the two-component system BvrR/BvrS.

Authors:  I López-Goñi; C Guzmán-Verri; L Manterola; A Sola-Landa; I Moriyón; E Moreno
Journal:  Vet Microbiol       Date:  2002-12-20       Impact factor: 3.293

Review 3.  Fun stories about Brucella: the "furtive nasty bug".

Authors:  J-J Letesson; P Lestrate; R-M Delrue; I Danese; F Bellefontaine; D Fretin; B Taminiau; A Tibor; A Dricot; C Deschamps; V Haine; S Leonard; T Laurent; P Mertens; J Vandenhaute; X De Bolle
Journal:  Vet Microbiol       Date:  2002-12-20       Impact factor: 3.293

4.  What is the nature of the replicative niche of a stealthy bug named Brucella?

Authors:  Stephan Köhler; Sylvie Michaux-Charachon; Françoise Porte; Michel Ramuz; Jean Pierre Liautard
Journal:  Trends Microbiol       Date:  2003-05       Impact factor: 17.079

Review 5.  Brucella proteomes--a review.

Authors:  Vito G DelVecchio; Mary Ann Wagner; Michel Eschenbrenner; Troy A Horn; Jo Ann Kraycer; Frank Estock; Phil Elzer; Cesar V Mujer
Journal:  Vet Microbiol       Date:  2002-12-20       Impact factor: 3.293

6.  C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

Authors:  Jérôme Reboul; Philippe Vaglio; Jean-François Rual; Philippe Lamesch; Monica Martinez; Christopher M Armstrong; Siming Li; Laurent Jacotot; Nicolas Bertin; Rekin's Janky; Troy Moore; James R Hudson; James L Hartley; Michael A Brasch; Jean Vandenhaute; Simon Boulton; Gregory A Endress; Sarah Jenna; Eric Chevet; Vasilis Papasotiropoulos; Peter P Tolias; Jason Ptacek; Mike Snyder; Raymond Huang; Mark R Chance; Hongmei Lee; Lynn Doucette-Stamm; David E Hill; Marc Vidal
Journal:  Nat Genet       Date:  2003-05       Impact factor: 38.330

7.  The analysis of the intramacrophagic virulome of Brucella suis deciphers the environment encountered by the pathogen inside the macrophage host cell.

Authors:  Stephan Kohler; Vincent Foulongne; Safia Ouahrani-Bettache; Gisele Bourg; Jacques Teyssier; Michel Ramuz; Jean-Pierre Liautard
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-18       Impact factor: 11.205

8.  The Brucella suis virB operon is induced intracellularly in macrophages.

Authors:  Maria Laura Boschiroli; Safia Ouahrani-Bettache; Vincent Foulongne; Sylvie Michaux-Charachon; Gisele Bourg; Annick Allardet-Servent; Chantal Cazevieille; Jean Pierre Liautard; Michel Ramuz; David O'Callaghan
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-05       Impact factor: 11.205

9.  Systematic cloning of Treponema pallidum open reading frames for protein expression and antigen discovery.

Authors:  Matthew McKevitt; Krupa Patel; David Smajs; Michael Marsh; Melanie McLoughlin; Steven J Norris; George M Weinstock; Timothy Palzkill
Journal:  Genome Res       Date:  2003-06-12       Impact factor: 9.043

10.  Brucella evades macrophage killing via VirB-dependent sustained interactions with the endoplasmic reticulum.

Authors:  Jean Celli; Chantal de Chastellier; Don-Marc Franchini; Javier Pizarro-Cerda; Edgardo Moreno; Jean-Pierre Gorvel
Journal:  J Exp Med       Date:  2003-08-18       Impact factor: 14.307

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  45 in total

1.  Systematic targeted mutagenesis of Brucella melitensis 16M reveals a major role for GntR regulators in the control of virulence.

Authors:  Valérie Haine; Audrey Sinon; Frédéric Van Steen; Stéphanie Rousseau; Marie Dozot; Pascal Lestrate; Christophe Lambert; Jean-Jacques Letesson; Xavier De Bolle
Journal:  Infect Immun       Date:  2005-09       Impact factor: 3.441

2.  Gateway-based destination vectors for functional analyses of bacterial ORFeomes: application to the Min system in Brucella abortus.

Authors:  Régis Hallez; Jean-Jacques Letesson; Jean Vandenhaute; Xavier De Bolle
Journal:  Appl Environ Microbiol       Date:  2006-12-15       Impact factor: 4.792

3.  Development of a functional genomics platform for Sinorhizobium meliloti: construction of an ORFeome.

Authors:  Brenda K Schroeder; Brent L House; Michael W Mortimer; Svetlana N Yurgel; Scott C Maloney; Kristel L Ward; Michael L Kahn
Journal:  Appl Environ Microbiol       Date:  2005-10       Impact factor: 4.792

4.  Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library.

Authors:  Jean-François Rual; Julian Ceron; John Koreth; Tong Hao; Anne-Sophie Nicot; Tomoko Hirozane-Kishikawa; Jean Vandenhaute; Stuart H Orkin; David E Hill; Sander van den Heuvel; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

5.  Global identification of protein kinase substrates by protein microarray analysis.

Authors:  Janine Mok; Hogune Im; Michael Snyder
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

6.  The use of Saccharomyces cerevisiae proteomic libraries to identify RNA-modifying proteins.

Authors:  Jane E Jackman; Elizabeth J Grayhack; Eric M Phizicky
Journal:  Methods Mol Biol       Date:  2008

7.  Brucella abortus ure2 region contains an acid-activated urea transporter and a nickel transport system.

Authors:  Félix J Sangari; Ana M Cayón; Asunción Seoane; Juan M García-Lobo
Journal:  BMC Microbiol       Date:  2010-04-10       Impact factor: 3.605

8.  Global analysis of quorum sensing targets in the intracellular pathogen Brucella melitensis 16 M.

Authors:  Sophie Uzureau; Julien Lemaire; Edouard Delaive; Marc Dieu; Anthoula Gaigneaux; Martine Raes; Xavier De Bolle; Jean-Jacques Letesson
Journal:  J Proteome Res       Date:  2010-06-04       Impact factor: 4.466

9.  Evaluation of recombinant invasive, non-pathogenic Eschericia coli as a vaccine vector against the intracellular pathogen, Brucella.

Authors:  Jerome S Harms; Marina A Durward; Diogo M Magnani; Gary A Splitter
Journal:  J Immune Based Ther Vaccines       Date:  2009-01-06

10.  Analysis of vaccinia virus-host protein-protein interactions: validations of yeast two-hybrid screenings.

Authors:  Leiliang Zhang; Nancy Y Villa; Masmudur M Rahman; Sherin Smallwood; Donna Shattuck; Chris Neff; Max Dufford; Jerry S Lanchbury; Joshua Labaer; Grant McFadden
Journal:  J Proteome Res       Date:  2009-09       Impact factor: 4.466

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