Literature DB >> 18982304

The use of Saccharomyces cerevisiae proteomic libraries to identify RNA-modifying proteins.

Jane E Jackman1, Elizabeth J Grayhack, Eric M Phizicky.   

Abstract

Biochemical assay of proteomic libraries derived from the Saccharomyces cerevisiae genome provides a powerful new tool for the assignment of activities to proteins. Particular advantages of this approach include the speed with which a protein can be identified and the generality for any biological activity for which an assay can be developed. We discuss the utility of this approach for the identification of RNA-modifying enzymes using a yeast proteomic library derived from a genomic set of strains expressing GST-ORF fusion proteins. This technique is also broadly applicable to other classes of RNA-protein interactions, including RNA binding and RNA degradation, and can be used with any of the proteomic libraries that are available.

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Year:  2008        PMID: 18982304      PMCID: PMC2788778          DOI: 10.1007/978-1-60327-475-3_25

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  22 in total

1.  A biochemical genomics approach for identifying genes by the activity of their products.

Authors:  M R Martzen; S M McCraith; S L Spinelli; F M Torres; S Fields; E J Grayhack; E M Phizicky
Journal:  Science       Date:  1999-11-05       Impact factor: 47.728

2.  Biochemical genomics approach to map activities to genes.

Authors:  Eric M Phizicky; Mark R Martzen; Stephen M McCraith; Sherry L Spinelli; Feng Xing; Neil P Shull; Ceri Van Slyke; Rebecca K Montagne; Francy M Torres; Stanley Fields; Elizabeth J Grayhack
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

3.  Two proteins that form a complex are required for 7-methylguanosine modification of yeast tRNA.

Authors:  Andrei Alexandrov; Mark R Martzen; Eric M Phizicky
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

4.  Global analysis of protein activities using proteome chips.

Authors:  H Zhu; M Bilgin; R Bangham; D Hall; A Casamayor; P Bertone; N Lan; R Jansen; S Bidlingmaier; T Houfek; T Mitchell; P Miller; R A Dean; M Gerstein; M Snyder
Journal:  Science       Date:  2001-07-26       Impact factor: 47.728

5.  The 2'-O-methyltransferase responsible for modification of yeast tRNA at position 4.

Authors:  Martha L Wilkinson; Sharon M Crary; Jane E Jackman; Elizabeth J Grayhack; Eric M Phizicky
Journal:  RNA       Date:  2007-01-22       Impact factor: 4.942

6.  A conserved family of Saccharomyces cerevisiae synthases effects dihydrouridine modification of tRNA.

Authors:  Feng Xing; Mark R Martzen; Eric M Phizicky
Journal:  RNA       Date:  2002-03       Impact factor: 4.942

7.  Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions.

Authors:  Chaochun Wei; Philippe Lamesch; Manimozhiyan Arumugam; Jennifer Rosenberg; Ping Hu; Marc Vidal; Michael R Brent
Journal:  Genome Res       Date:  2005-04       Impact factor: 9.043

8.  The specificities of four yeast dihydrouridine synthases for cytoplasmic tRNAs.

Authors:  Feng Xing; Shawna L Hiley; Timothy R Hughes; Eric M Phizicky
Journal:  J Biol Chem       Date:  2004-02-16       Impact factor: 5.157

9.  S-Adenosylmethionine-dependent methylation in Saccharomyces cerevisiae. Identification of a novel protein arginine methyltransferase.

Authors:  A Niewmierzycka; S Clarke
Journal:  J Biol Chem       Date:  1999-01-08       Impact factor: 5.157

10.  32P-labeling test for DNA damage.

Authors:  K Randerath; M V Reddy; R C Gupta
Journal:  Proc Natl Acad Sci U S A       Date:  1981-10       Impact factor: 11.205

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  1 in total

1.  Identification of the enzymes responsible for m2,2G and acp3U formation on cytosolic tRNA from insects and plants.

Authors:  Holly M Funk; Ruoxia Zhao; Maggie Thomas; Sarah M Spigelmyer; Nichlas J Sebree; Regan O Bales; Jamison B Burchett; Justen B Mamaril; Patrick A Limbach; Michael P Guy
Journal:  PLoS One       Date:  2020-11-30       Impact factor: 3.240

  1 in total

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