Literature DB >> 15477604

RNA polymerase I remains intact without subunit exchange through multiple rounds of transcription in Saccharomyces cerevisiae.

David A Schneider1, Masayasu Nomura.   

Abstract

Previous experiments using mammalian cells suggested that after each round of transcription, RNA polymerase I (Pol I) dissociates into subunits that leave and reenter the nucleolus as individual subunits, before formation of a new initiation complex. In this study, we show that the size and subunit composition of Pol I did not change significantly when Pol I was not engaged in rRNA transcription, brought about by either the absence of Pol I-specific rDNA template or specific inhibition of the transcription initiation step that requires Rrn3p. In fact, Pol I purified from cells completely lacking rDNA repeats was more active than when purified from wild-type cells in an in vitro transcription system designed to assay active Pol I-Rrn3p complexes. Furthermore, measurements of the exchange of A135 and A190 subunits between preexistent Pol I and newly synthesized Pol I showed that these two largest subunits of Pol I do not disassociate through many rounds of transcription in vivo. Thus, Pol I is not a dynamic protein complex but rather a stable enzyme.

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Year:  2004        PMID: 15477604      PMCID: PMC524078          DOI: 10.1073/pnas.0406746101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

Review 1.  Economics of ribosome biosynthesis.

Authors:  J R Warner; J Vilardell; J H Sohn
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2001

2.  Purification and assay of upstream activation factor, core factor, Rrn3p, and yeast RNA polymerase I.

Authors:  Prasad Tongaonkar; Jonathan A Dodd; Masayasu Nomura
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

3.  A specialized form of RNA polymerase I, essential for initiation and growth-dependent regulation of rRNA synthesis, is disrupted during transcription.

Authors:  P Milkereit; H Tschochner
Journal:  EMBO J       Date:  1998-07-01       Impact factor: 11.598

4.  RRN11 encodes the third subunit of the complex containing Rrn6p and Rrn7p that is essential for the initiation of rDNA transcription by yeast RNA polymerase I.

Authors:  D Lalo; J S Steffan; J A Dodd; M Nomura
Journal:  J Biol Chem       Date:  1996-08-30       Impact factor: 5.157

5.  Histones H3 and H4 are components of upstream activation factor required for the high-level transcription of yeast rDNA by RNA polymerase I.

Authors:  J Keener; J A Dodd; D Lalo; M Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-09       Impact factor: 11.205

6.  Tor pathway regulates Rrn3p-dependent recruitment of yeast RNA polymerase I to the promoter but does not participate in alteration of the number of active genes.

Authors:  Jonathan A Claypool; Sarah L French; Katsuki Johzuka; Kristilyn Eliason; Loan Vu; Jonathan A Dodd; Ann L Beyer; Masayasu Nomura
Journal:  Mol Biol Cell       Date:  2003-10-31       Impact factor: 4.138

7.  mTOR-dependent activation of the transcription factor TIF-IA links rRNA synthesis to nutrient availability.

Authors:  Christine Mayer; Jian Zhao; Xuejun Yuan; Ingrid Grummt
Journal:  Genes Dev       Date:  2004-02-15       Impact factor: 11.361

8.  Reconstitution of yeast RNA polymerase I transcription in vitro from purified components. TATA-binding protein is not required for basal transcription.

Authors:  J Keener; C A Josaitis; J A Dodd; M Nomura
Journal:  J Biol Chem       Date:  1998-12-11       Impact factor: 5.157

9.  Multiprotein transcription factor UAF interacts with the upstream element of the yeast RNA polymerase I promoter and forms a stable preinitiation complex.

Authors:  D A Keys; B S Lee; J A Dodd; T T Nguyen; L Vu; E Fantino; L M Burson; Y Nogi; M Nomura
Journal:  Genes Dev       Date:  1996-04-01       Impact factor: 11.361

10.  Mutational analysis of the structure and localization of the nucleolus in the yeast Saccharomyces cerevisiae.

Authors:  M Oakes; J P Aris; J S Brockenbrough; H Wai; L Vu; M Nomura
Journal:  J Cell Biol       Date:  1998-10-05       Impact factor: 10.539

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  8 in total

1.  The trypanosomatid-specific N terminus of RPA2 is required for RNA polymerase I assembly, localization, and function.

Authors:  Jan-Peter Daniels; Keith Gull; Bill Wickstead
Journal:  Eukaryot Cell       Date:  2012-03-02

Review 2.  The moving parts of the nucleolus.

Authors:  M O J Olson; Miroslav Dundr
Journal:  Histochem Cell Biol       Date:  2005-03-02       Impact factor: 4.304

3.  RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing.

Authors:  D A Schneider; S L French; Y N Osheim; A O Bailey; L Vu; J Dodd; J R Yates; A L Beyer; M Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-14       Impact factor: 11.205

4.  Modulation of RNA polymerase assembly dynamics in transcriptional regulation.

Authors:  Stanislaw A Gorski; Sara K Snyder; Sam John; Ingrid Grummt; Tom Misteli
Journal:  Mol Cell       Date:  2008-05-23       Impact factor: 17.970

5.  Conditional depletion of the RNA polymerase I subunit PAF53 reveals that it is essential for mitosis and enables identification of functional domains.

Authors:  Rachel McNamar; Zakaria Abu-Adas; Katrina Rothblum; Bruce A Knutson; Lawrence I Rothblum
Journal:  J Biol Chem       Date:  2019-11-14       Impact factor: 5.157

Review 6.  Assembly of the transcription machinery: ordered and stable, random and dynamic, or both?

Authors:  Timothy J Stasevich; James G McNally
Journal:  Chromosoma       Date:  2011-11-03       Impact factor: 4.316

Review 7.  Imaging transcription in living cells.

Authors:  Xavier Darzacq; Jie Yao; Daniel R Larson; Sébastien Z Causse; Lana Bosanac; Valeria de Turris; Vera M Ruda; Timothee Lionnet; Daniel Zenklusen; Benjamin Guglielmi; Robert Tjian; Robert H Singer
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

8.  Small-Molecule Targeting of RNA Polymerase I Activates a Conserved Transcription Elongation Checkpoint.

Authors:  Ting Wei; Saman M Najmi; Hester Liu; Karita Peltonen; Alena Kucerova; David A Schneider; Marikki Laiho
Journal:  Cell Rep       Date:  2018-04-10       Impact factor: 9.423

  8 in total

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