Literature DB >> 15471345

Spin-forbidden CO ligand recombination in myoglobin.

Jeremy N Harvey1.   

Abstract

The reaction of small ligands within the distal pocket of haem proteins such as myoglobin, to form ligated, low-spin iron complexes is an archetypal spin-forbidden process in bioinorganic chemistry, because the initial, "deoxy" iron complex has a high-spin ground state. Density functional theory (DFT), transition-state theory (TST), and hybrid DFT/molecular mechanics (QM/MM) calculations are reported on the carbon monoxide reaction. Using DFT data for a model compound, TST rate calculations at room temperature are carried out which give fair agreement with experiment, and suggest a highly non-adiabatic nature to the reaction. QM/MM calculations on the whole protein are reported, which are in qualitative agreement with the gas-phase model results, but suggest that protein matrix effects on the reaction rate may be important.

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Year:  2004        PMID: 15471345     DOI: 10.1039/b314768a

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  19 in total

1.  The Fe-CO bond energy in myoglobin: a QM/MM study of the effect of tertiary structure.

Authors:  Nikki Strickland; Adrian J Mulholland; Jeremy N Harvey
Journal:  Biophys J       Date:  2005-12-30       Impact factor: 4.033

2.  A quantum-chemical picture of hemoglobin affinity.

Authors:  R E Alcantara; C Xu; T G Spiro; V Guallar
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

3.  Analysis of polarization in QM/MM modelling of biologically relevant hydrogen bonds.

Authors:  Kittusamy Senthilkumar; Jon I Mujika; Kara E Ranaghan; Frederick R Manby; Adrian J Mulholland; Jeremy N Harvey
Journal:  J R Soc Interface       Date:  2008-12-06       Impact factor: 4.118

4.  Understanding the determinants of selectivity in drug metabolism through modeling of dextromethorphan oxidation by cytochrome P450.

Authors:  Julianna Oláh; Adrian J Mulholland; Jeremy N Harvey
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

5.  Identification of Mutational Hot Spots for Substrate Diffusion: Application to Myoglobin.

Authors:  David De Sancho; Adam Kubas; Po-Hung Wang; Jochen Blumberger; Robert B Best
Journal:  J Chem Theory Comput       Date:  2015-04-14       Impact factor: 6.006

6.  Measurements of heme relaxation and ligand recombination in strong magnetic fields.

Authors:  Zhenyu Zhang; Abdelkrim Benabbas; Xiong Ye; Anchi Yu; Paul M Champion
Journal:  J Phys Chem B       Date:  2009-08-06       Impact factor: 2.991

7.  Ultrafast CO Kinetics in Heme Proteins: Adiabatic Ligand Binding and Heavy Atom Tunneling.

Authors:  Abdelkrim Benabbas; Yuhan Sun; Thomas L Poulos; Paul M Champion
Journal:  J Am Chem Soc       Date:  2017-10-24       Impact factor: 15.419

8.  Does compound I vary significantly between isoforms of cytochrome P450?

Authors:  Richard Lonsdale; Julianna Oláh; Adrian J Mulholland; Jeremy N Harvey
Journal:  J Am Chem Soc       Date:  2011-09-12       Impact factor: 15.419

9.  Determinants of reactivity and selectivity in soluble epoxide hydrolase from quantum mechanics/molecular mechanics modeling.

Authors:  Richard Lonsdale; Simon Hoyle; Daniel T Grey; Lars Ridder; Adrian J Mulholland
Journal:  Biochemistry       Date:  2012-02-10       Impact factor: 3.162

10.  Quantum mechanics/molecular mechanics modeling of regioselectivity of drug metabolism in cytochrome P450 2C9.

Authors:  Richard Lonsdale; Kerensa T Houghton; Jolanta Żurek; Christine M Bathelt; Nicolas Foloppe; Marcel J de Groot; Jeremy N Harvey; Adrian J Mulholland
Journal:  J Am Chem Soc       Date:  2013-05-16       Impact factor: 15.419

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