Literature DB >> 15454556

Comparative mapping in the Pinaceae.

Konstantin V Krutovsky1, Michela Troggio, Garth R Brown, Kathleen D Jermstad, David B Neale.   

Abstract

A comparative genetic map was constructed between two important genera of the family Pinaceae. Ten homologous linkage groups in loblolly pine (Pinus taeda L.) and Douglas fir (Pseudotsuga menziesii [Mirb.] Franco) were identified using orthologous expressed sequence tag polymorphism (ESTP) and restriction fragment length polymorphism (RFLP) markers. The comparative mapping revealed extensive synteny and colinearity between genomes of the Pinaceae, consistent with the hypothesis of conservative chromosomal evolution in this important plant family. This study reports the first comparative map in forest trees at the family taxonomic level and establishes a framework for comparative genomics in Pinaceae.

Entities:  

Mesh：

Substances：

Year:  2004        PMID： 15454556      PMCID： PMC1448108          DOI： 10.1534/genetics.104.028381

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  52 in total

Review 1.  Plant genome evolution: lessons from comparative genomics at the DNA level.

Authors:  Renate Schmidt
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

3.  Use of haploid mixtures and heteroduplex analysis enhance polymorphisms revealed by denaturing gradient gel electrophoresis.

Authors:  B Temesgen; D B Neale; D E Harry
Journal:  Biotechniques       Date:  2000-01       Impact factor: 1.993

4.  Phylogeny and divergence times in Pinaceae: evidence from three genomes.

Authors:  X Q Wang; D C Tank; T Sang
Journal:  Mol Biol Evol       Date:  2000-05       Impact factor: 16.240

5.  Distinguishing homologous from analogous proteins.

Authors:  W M Fitch
Journal:  Syst Zool       Date:  1970-06

Review 6.  Trends in comparative genetics and their potential impacts on wheat and barley research.

Authors:  David A Laurie; Katrien M Devos
Journal:  Plant Mol Biol       Date:  2002 Mar-Apr       Impact factor: 4.076

7.  Automated finishing with autofinish.

Authors:  D Gordon; C Desmarais; P Green
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

8.  A consensus map for loblolly pine (Pinus taeda L.). I. Construction and integration of individual linkage maps from two outbred three-generation pedigrees.

Authors:  M M Sewell; B K Sherman; D B Neale
Journal:  Genetics       Date:  1999-01       Impact factor: 4.562

9.  Estimates of conserved microsynteny among the genomes of Glycine max, Medicago truncatula and Arabidopsis thaliana.

Authors:  H H Yan; J Mudge; D-J Kim; D Larsen; R C Shoemaker; D R Cook; N D Young
Journal:  Theor Appl Genet       Date:  2003-01-25       Impact factor: 5.699

10.  A barley RFLP map: alignment of three barley maps and comparisons to Gramineae species.

Authors:  J D Sherman; A L Fenwick; D M Namuth; N L Lapitan
Journal:  Theor Appl Genet       Date:  1995-09       Impact factor: 5.699
View more
  31 in total

1.  Nucleotide diversity and linkage disequilibrium in cold-hardiness- and wood quality-related candidate genes in Douglas fir.

Authors:  Konstantin V Krutovsky; David B Neale
Journal:  Genetics       Date:  2005-09-12       Impact factor: 4.562

2.  A composite linkage map from two crosses for the species complex Picea mariana x Picea rubens and analysis of synteny with other Pinaceae.

Authors:  Betty Pelgas; Jean Bousquet; Stéphanie Beauseigle; Nathalie Isabel
Journal:  Theor Appl Genet       Date:  2005-11-10       Impact factor: 5.699

3.  The development and mapping of functional markers in Fragaria and their transferability and potential for mapping in other genera.

Authors:  D J Sargent; A Rys; S Nier; D W Simpson; K R Tobutt
Journal:  Theor Appl Genet       Date:  2006-11-08       Impact factor: 5.699

4.  Differential methylation of genes and repeats in land plants.

Authors:  Pablo D Rabinowicz; Robert Citek; Muhammad A Budiman; Andrew Nunberg; Joseph A Bedell; Nathan Lakey; Andrew L O'Shaughnessy; Lidia U Nascimento; W Richard McCombie; Robert A Martienssen
Journal:  Genome Res       Date:  2005-10       Impact factor: 9.043

5.  Comparative analysis of expressed sequence tags of conifers and angiosperms reveals sequences specifically conserved in conifers.

Authors:  Tokuko Ujino-Ihara; Hiroyuki Kanamori; Hiroko Yamane; Yuriko Taguchi; Nobukazu Namiki; Yuzuru Mukai; Kensuke Yoshimura; Yoshihiko Tsumura
Journal:  Plant Mol Biol       Date:  2005-12       Impact factor: 4.076

Review 6.  Forest tree genomics: growing resources and applications.

Authors:  David B Neale; Antoine Kremer
Journal:  Nat Rev Genet       Date:  2011-02       Impact factor: 53.242

7.  Comparative genome mapping among Picea glauca, P. mariana x P. rubens and P. abies, and correspondence with other Pinaceae.

Authors:  Betty Pelgas; Stéphanie Beauseigle; Virginie Acheré; Sylvain Jeandroz; Jean Bousquet; Nathalie Isabel
Journal:  Theor Appl Genet       Date:  2006-10-24       Impact factor: 5.699

8.  Near-saturated and complete genetic linkage map of black spruce (Picea mariana).

Authors:  Bum-Yong Kang; Ishminder K Mann; John E Major; Om P Rajora
Journal:  BMC Genomics       Date:  2010-09-24       Impact factor: 3.969

9.  Comparative genetic linkage map of Solanum sect. Juglandifolia: evidence of chromosomal rearrangements and overall synteny with the tomatoes and related nightshades.

Authors:  Elena Albrecht; Roger T Chetelat
Journal:  Theor Appl Genet       Date:  2008-12-20       Impact factor: 5.699

10.  Development and bin mapping of a Rosaceae Conserved Ortholog Set (COS) of markers.

Authors:  Antonio Cabrera; Alex Kozik; Werner Howad; Pere Arus; Amy F Iezzoni; Esther van der Knaap
Journal:  BMC Genomics       Date:  2009-11-29       Impact factor: 3.969
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.