Literature DB >> 15454419

The complex kinetics of protein folding in wide temperature ranges.

Jin Wang1.   

Abstract

The complex protein folding kinetics in wide temperature ranges is studied through diffusive dynamics on the underlying energy landscape. The well-known kinetic chevron rollover behavior is recovered from the mean first passage time, with the U-shape dependence on temperature. The fastest folding temperature T0 is found to be smaller than the folding transition temperature Tf. We found that the fluctuations of the kinetics through the distribution of first passage time show rather universal behavior, from high-temperature exponential Poissonian kinetics to the relatively low-temperature highly non-exponential kinetics. The transition temperature is at Tk and T0 < Tk < Tf. In certain low-temperature regimes, a power law behavior at long time emerges. At very low temperatures (lower than trapping transition temperature T < T0/(4 approximately 6)), the kinetics is an exponential Poissonian process again. Copyright 2004 Biophysical Society

Mesh:

Substances:

Year:  2004        PMID: 15454419      PMCID: PMC1304642          DOI: 10.1529/biophysj.104.042812

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  24 in total

1.  Towards a consistent modeling of protein thermodynamic and kinetic cooperativity: how applicable is the transition state picture to folding and unfolding?

Authors:  Hüseyin Kaya; Hue Sun Chan
Journal:  J Mol Biol       Date:  2002-01-25       Impact factor: 5.469

2.  Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy.

Authors:  Benjamin Schuler; Everett A Lipman; William A Eaton
Journal:  Nature       Date:  2002-10-17       Impact factor: 49.962

Review 3.  Understanding protein folding with energy landscape theory. Part I: Basic concepts.

Authors:  Steven S Plotkin; José N Onuchic
Journal:  Q Rev Biophys       Date:  2002-05       Impact factor: 5.318

4.  Diffusion dynamics, moments, and distribution of first-passage time on the protein-folding energy landscape, with applications to single molecules.

Authors:  Chi-Lun Lee; Chien-Ting Lin; George Stell; Jin Wang
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-04-17

5.  Cooperativity principles in protein folding.

Authors:  Hue Sun Chan; Seishi Shimizu; Hüseyin Kaya
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

6.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

7.  Single-molecule measurement of protein folding kinetics.

Authors:  Everett A Lipman; Benjamin Schuler; Olgica Bakajin; William A Eaton
Journal:  Science       Date:  2003-08-29       Impact factor: 47.728

8.  Scaling concepts for the dynamics of viscous liquids near an ideal glassy state.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1989-07-15

9.  Single-molecule enzymatic dynamics.

Authors:  H P Lu; L Xun; X S Xie
Journal:  Science       Date:  1998-12-04       Impact factor: 47.728

10.  Tuning the free-energy landscape of a WW domain by temperature, mutation, and truncation.

Authors:  Houbi Nguyen; Marcus Jager; Alessandro Moretto; Martin Gruebele; Jeffery W Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-21       Impact factor: 11.205

View more
  5 in total

1.  Probing the kinetics of single molecule protein folding.

Authors:  Vitor B P Leite; José N Onuchic; George Stell; Jin Wang
Journal:  Biophys J       Date:  2004-10-01       Impact factor: 4.033

2.  Chevron behavior and isostable enthalpic barriers in protein folding: successes and limitations of simple Gō-like modeling.

Authors:  Hüseyin Kaya; Zhirong Liu; Hue Sun Chan
Journal:  Biophys J       Date:  2005-04-29       Impact factor: 4.033

3.  Evidence of discrete substates and unfolding pathways in green fluorescent protein.

Authors:  Giancarlo Baldini; Fabio Cannone; Giuseppe Chirico; Maddalena Collini; Barbara Campanini; Stefano Bettati; Andrea Mozzarelli
Journal:  Biophys J       Date:  2006-12-01       Impact factor: 4.033

4.  Configuration-dependent diffusion can shift the kinetic transition state and barrier height of protein folding.

Authors:  Jorge Chahine; Ronaldo J Oliveira; Vitor B P Leite; Jin Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-05       Impact factor: 11.205

Review 5.  Envelope stress responses: balancing damage repair and toxicity.

Authors:  Angela M Mitchell; Thomas J Silhavy
Journal:  Nat Rev Microbiol       Date:  2019-07       Impact factor: 60.633

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.