Literature DB >> 12786394

Diffusion dynamics, moments, and distribution of first-passage time on the protein-folding energy landscape, with applications to single molecules.

Chi-Lun Lee1, Chien-Ting Lin, George Stell, Jin Wang.   

Abstract

We study the dynamics of protein folding via statistical energy-landscape theory. In particular, we concentrate on the local-connectivity case with the folding progress described by the fraction of native conformations. We found that the first passage-time (FPT) distribution undergoes a dynamic transition at a temperature below which the FPT distribution develops a power-law tail, a signature of the intermittent nonexponential kinetic phenomena for the folding dynamics. Possible applications to single-molecule dynamics experiments are discussed.

Mesh:

Year:  2003        PMID: 12786394     DOI: 10.1103/PhysRevE.67.041905

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  12 in total

1.  The complex kinetics of protein folding in wide temperature ranges.

Authors:  Jin Wang
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

2.  Downhill kinetics of biomolecular interface binding: globally connected scenario.

Authors:  Jin Wang; Weimin Huang; Hongyang Lu; Erkang Wang
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

3.  Probing the kinetics of single molecule protein folding.

Authors:  Vitor B P Leite; José N Onuchic; George Stell; Jin Wang
Journal:  Biophys J       Date:  2004-10-01       Impact factor: 4.033

4.  The origin of nonmonotonic complex behavior and the effects of nonnative interactions on the diffusive properties of protein folding.

Authors:  Ronaldo J Oliveira; Paul C Whitford; Jorge Chahine; Jin Wang; José N Onuchic; Vitor B P Leite
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

5.  Quantifying kinetic paths of protein folding.

Authors:  Jin Wang; Kun Zhang; Hongyang Lu; Erkang Wang
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

6.  Quantifying the kinetic paths of flexible biomolecular recognition.

Authors:  Jin Wang; Kun Zhang; Hongyang Lu; Erkang Wang
Journal:  Biophys J       Date:  2006-04-14       Impact factor: 4.033

7.  Free-energy distribution of binary protein-protein binding suggests cross-species interactome differences.

Authors:  Yi Y Shi; Gerald A Miller; Hong Qian; Karol Bomsztyk
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-21       Impact factor: 11.205

8.  Configuration-dependent diffusion can shift the kinetic transition state and barrier height of protein folding.

Authors:  Jorge Chahine; Ronaldo J Oliveira; Vitor B P Leite; Jin Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-05       Impact factor: 11.205

Review 9.  Fast protein folding kinetics.

Authors:  Hannah Gelman; Martin Gruebele
Journal:  Q Rev Biophys       Date:  2014-03-18       Impact factor: 5.318

10.  Diffusional channeling in the sulfate-activating complex: combined continuum modeling and coarse-grained brownian dynamics studies.

Authors:  Yuhui Cheng; Chia-En A Chang; Zeyun Yu; Yongjie Zhang; Meihao Sun; Thomas S Leyh; Michael J Holst; J Andrew McCammon
Journal:  Biophys J       Date:  2008-08-08       Impact factor: 4.033

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