Literature DB >> 15454405

MAPK cascade possesses decoupled controllability of signal amplification and duration.

Kapil Mayawala1, Claudio A Gelmi, Jeremy S Edwards.   

Abstract

The three important characteristics of the output signal of mitogen activated protein kinase (MAPK) cascade are time delay between stimulus and response, amplitude gain, and duration of the output signal. In this study, we performed a sensitivity analysis on the computational model of epidermal growth factor receptor (EGFR) activated MAPK cascade developed by Schoeberl and co-workers (1) to identify the sensitive steps of the pathway affecting these characteristics. We show that the signaling network is sensitive in a decoupled manner, which provides the ability to control its output amplitude and duration one at a time. Signal duration is found sensitive only to the phosphatase reactions at the MEK level. In contrast, signal amplitude is found most sensitive to the phosphatase reactions at the ERK level. Time delay is found to be a robust characteristic of the system.

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Year:  2004        PMID: 15454405      PMCID: PMC1304831          DOI: 10.1529/biophysj.104.051888

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  8 in total

1.  Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors.

Authors:  Birgit Schoeberl; Claudia Eichler-Jonsson; Ernst Dieter Gilles; Gertraud Müller
Journal:  Nat Biotechnol       Date:  2002-04       Impact factor: 54.908

2.  The role of proofreading in signal transduction specificity.

Authors:  Peter S Swain; Eric D Siggia
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

3.  Attenuation of noise in ultrasensitive signaling cascades.

Authors:  Mukund Thattai; Alexander van Oudenaarden
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

Review 4.  Modeling of signaling networks.

Authors:  Susana R Neves; Ravi Iyengar
Journal:  Bioessays       Date:  2002-12       Impact factor: 4.345

Review 5.  Tripping the switch fantastic: how a protein kinase cascade can convert graded inputs into switch-like outputs.

Authors:  J E Ferrell
Journal:  Trends Biochem Sci       Date:  1996-12       Impact factor: 13.807

6.  Amplification and adaptation in regulatory and sensory systems.

Authors:  D E Koshland; A Goldbeter; J B Stock
Journal:  Science       Date:  1982-07-16       Impact factor: 47.728

7.  Ultrasensitivity in the mitogen-activated protein kinase cascade.

Authors:  C Y Huang; J E Ferrell
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-17       Impact factor: 11.205

Review 8.  Specificity of receptor tyrosine kinase signaling: transient versus sustained extracellular signal-regulated kinase activation.

Authors:  C J Marshall
Journal:  Cell       Date:  1995-01-27       Impact factor: 41.582

  8 in total
  18 in total

Review 1.  Mathematical simulation of membrane protein clustering for efficient signal transduction.

Authors:  Krishnan Radhakrishnan; Ádám Halász; Meghan M McCabe; Jeremy S Edwards; Bridget S Wilson
Journal:  Ann Biomed Eng       Date:  2012-06-06       Impact factor: 3.934

2.  DARPP-32 is required for MAPK/ERK signaling in thyroid cells.

Authors:  Ana Chocarro-Calvo; Miguel A Zaballos; Pilar Santisteban; Custodia García-Jiménez
Journal:  Mol Endocrinol       Date:  2012-02-02

Review 3.  Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway.

Authors:  Richard J Orton; Oliver E Sturm; Vladislav Vyshemirsky; Muffy Calder; David R Gilbert; Walter Kolch
Journal:  Biochem J       Date:  2005-12-01       Impact factor: 3.857

4.  Modeling polarity buildup and cell fate decision in the fly eye: insight into the connection between the PCP and Notch pathways.

Authors:  Jean-François Le Garrec; Michel Kerszberg
Journal:  Dev Genes Evol       Date:  2008-07-24       Impact factor: 0.900

Review 5.  Modelling cellular signalling systems.

Authors:  Padmini Rangamani; Ravi Iyengar
Journal:  Essays Biochem       Date:  2008       Impact factor: 8.000

6.  Activation kinetics of RAF protein in the ternary complex of RAF, RAS-GTP, and kinase on the plasma membrane of living cells: single-molecule imaging analysis.

Authors:  Kayo Hibino; Tatsuo Shibata; Toshio Yanagida; Yasushi Sako
Journal:  J Biol Chem       Date:  2011-08-23       Impact factor: 5.157

7.  Analysis of the molecular networks in androgen dependent and independent prostate cancer revealed fragile and robust subsystems.

Authors:  Ryan Tasseff; Satyaprakash Nayak; Saniya Salim; Poorvi Kaushik; Noreen Rizvi; Jeffrey D Varner
Journal:  PLoS One       Date:  2010-01-28       Impact factor: 3.240

8.  A comparison of approximation techniques for variance-based sensitivity analysis of biochemical reaction systems.

Authors:  Hong-Xuan Zhang; John Goutsias
Journal:  BMC Bioinformatics       Date:  2010-05-12       Impact factor: 3.169

9.  Sprouty2 association with B-Raf is regulated by phosphorylation and kinase conformation.

Authors:  Suzanne C Brady; Mathew L Coleman; June Munro; Stephan M Feller; Nicolas A Morrice; Michael F Olson
Journal:  Cancer Res       Date:  2009-08-18       Impact factor: 12.701

Review 10.  Multiscale models of breast cancer progression.

Authors:  Anirikh Chakrabarti; Scott Verbridge; Abraham D Stroock; Claudia Fischbach; Jeffrey D Varner
Journal:  Ann Biomed Eng       Date:  2012-09-25       Impact factor: 3.934

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