Literature DB >> 19201964

Engineering a synthetic dual-organism system for hydrogen production.

Zeev Waks1, Pamela A Silver.   

Abstract

Molecular hydrogen produced biologically from renewable biomass is an attractive replacement for fossil fuels. One potential route for biological hydrogen production is the conversion of biomass into formate, which can subsequently be processed into hydrogen by Escherichia coli. Formate is also a widely used commodity chemical, making its bioproduction even more attractive. Here we demonstrate the implementation of a formate-overproducing pathway in Saccharomyces cerevisiae, a well-established industrial organism. By expressing the anaerobic enzyme pyruvate formate lyase from E. coli, we engineered a strain of yeast that overproduced formate relative to undetectable levels in the wild type. The addition of a downstream enzyme, AdhE of E. coli, resulted in an additional 4.5-fold formate production increase as well as an increase in growth rate and biomass yield. Overall, an 18-fold formate increase was achieved in a strain background whose formate degradation pathway had been deleted. Finally, as a proof of concept, we were able to produce hydrogen from this formate-containing medium by using E. coli as a catalyst in a two-step process. With further optimizations, it may be feasible to use S. cerevisiae on a larger scale as the foundation for yeast-based biohydrogen.

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Year:  2009        PMID: 19201964      PMCID: PMC2663214          DOI: 10.1128/AEM.02009-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  44 in total

Review 1.  The role of ammonia metabolism in nitrogen catabolite repression in Saccharomyces cerevisiae.

Authors:  E G ter Schure; N A van Riel; C T Verrips
Journal:  FEMS Microbiol Rev       Date:  2000-01       Impact factor: 16.408

2.  Regulation of the balance of one-carbon metabolism in Saccharomyces cerevisiae.

Authors:  M D Piper; S P Hong; G E Ball; I W Dawes
Journal:  J Biol Chem       Date:  2000-10-06       Impact factor: 5.157

3.  Formate and its role in hydrogen production in Escherichia coli.

Authors:  R G Sawers
Journal:  Biochem Soc Trans       Date:  2005-02       Impact factor: 5.407

4.  Determination of the cytosolic free NAD/NADH ratio in Saccharomyces cerevisiae under steady-state and highly dynamic conditions.

Authors:  André B Canelas; Walter M van Gulik; Joseph J Heijnen
Journal:  Biotechnol Bioeng       Date:  2008-07-01       Impact factor: 4.530

5.  Analysis of in vivo kinetics of glycolysis in aerobic Saccharomyces cerevisiae by application of glucose and ethanol pulses.

Authors:  Diana Visser; Gertan A van Zuylen; Jan C van Dam; Michael R Eman; Angela Pröll; Cor Ras; Liang Wu; Walter M van Gulik; Joseph J Heijnen
Journal:  Biotechnol Bioeng       Date:  2004-10-20       Impact factor: 4.530

6.  Ultrastructure and pyruvate formate-lyase radical quenching property of the multienzymic AdhE protein of Escherichia coli.

Authors:  D Kessler; W Herth; J Knappe
Journal:  J Biol Chem       Date:  1992-09-05       Impact factor: 5.157

Review 7.  Improvement of fermentative hydrogen production: various approaches.

Authors:  Kaushik Nath; Debabrata Das
Journal:  Appl Microbiol Biotechnol       Date:  2004-07-31       Impact factor: 4.813

8.  Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C.

Authors:  F Winston; C Dollard; S L Ricupero-Hovasse
Journal:  Yeast       Date:  1995-01       Impact factor: 3.239

9.  Metabolic engineering to enhance bacterial hydrogen production.

Authors:  Toshinari Maeda; Viviana Sanchez-Torres; Thomas K Wood
Journal:  Microb Biotechnol       Date:  2008-01       Impact factor: 5.813

Review 10.  Molecular biology of microbial hydrogenases.

Authors:  P M Vignais; A Colbeau
Journal:  Curr Issues Mol Biol       Date:  2004-07       Impact factor: 2.081

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  11 in total

1.  Systems-level engineering of nonfermentative metabolism in yeast.

Authors:  Caleb J Kennedy; Patrick M Boyle; Zeev Waks; Pamela A Silver
Journal:  Genetics       Date:  2009-06-29       Impact factor: 4.562

2.  Directed evolution as a powerful synthetic biology tool.

Authors:  Ryan E Cobb; Ning Sun; Huimin Zhao
Journal:  Methods       Date:  2012-03-23       Impact factor: 3.608

3.  Tuning and controlling gene expression noise in synthetic gene networks.

Authors:  Kevin F Murphy; Rhys M Adams; Xiao Wang; Gábor Balázsi; James J Collins
Journal:  Nucleic Acids Res       Date:  2010-03-08       Impact factor: 16.971

Review 4.  Synthetic biology: understanding biological design from synthetic circuits.

Authors:  Shankar Mukherji; Alexander van Oudenaarden
Journal:  Nat Rev Genet       Date:  2009-11-10       Impact factor: 53.242

5.  Fermentative hydrogen production from glucose and starch using pure strains and artificial co-cultures ofClostridium spp.

Authors:  Julien Masset; Magdalena Calusinska; Christopher Hamilton; Serge Hiligsmann; Bernard Joris; Annick Wilmotte; Philippe Thonart
Journal:  Biotechnol Biofuels       Date:  2012-05-22       Impact factor: 6.040

6.  Towards a synthetic chloroplast.

Authors:  Christina M Agapakis; Henrike Niederholtmeyer; Ramil R Noche; Tami D Lieberman; Sean G Megason; Jeffrey C Way; Pamela A Silver
Journal:  PLoS One       Date:  2011-04-20       Impact factor: 3.240

7.  Engineering strategy of yeast metabolism for higher alcohol production.

Authors:  Fumio Matsuda; Chikara Furusawa; Takashi Kondo; Jun Ishii; Hiroshi Shimizu; Akihiko Kondo
Journal:  Microb Cell Fact       Date:  2011-09-08       Impact factor: 5.328

8.  Adaptive evolution of synthetic cooperating communities improves growth performance.

Authors:  Xiaolin Zhang; Jennifer L Reed
Journal:  PLoS One       Date:  2014-10-09       Impact factor: 3.240

9.  Identification of Oxygen-Independent Pathways for Pyridine Nucleotide and Coenzyme A Synthesis in Anaerobic Fungi by Expression of Candidate Genes in Yeast.

Authors:  Thomas Perli; Aurin M Vos; Jonna Bouwknegt; Wijb J C Dekker; Sanne J Wiersma; Christiaan Mooiman; Raúl A Ortiz-Merino; Jean-Marc Daran; Jack T Pronk
Journal:  mBio       Date:  2021-06-22       Impact factor: 7.867

10.  Comparative multi-goal tradeoffs in systems engineering of microbial metabolism.

Authors:  David Byrne; Alexandra Dumitriu; Daniel Segrè
Journal:  BMC Syst Biol       Date:  2012-09-26
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