Literature DB >> 1542683

Structural rearrangements of the chloroplast genome provide an important phylogenetic link in ferns.

D B Stein1, D S Conant, M E Ahearn, E T Jordan, S A Kirch, M Hasebe, K Iwatsuki, M K Tan, J A Thomson.   

Abstract

The chloroplast genome of most land plants is highly conserved. In contrast, physical and gene mapping studies have revealed a highly rearranged chloroplast genome in species representing four families of ferns. In all four, there has been a rare duplication of the psbA gene and the order of the psbA, 16S, and 23S rRNA genes has been inverted. Our analysis shows that the described rearrangement results from a minimum of two inversions within the inverted repeat. This chloroplast DNA structure provides unambiguous evidence that phylogenetically links families of ferns once thought to belong to different major evolutionary lineages.

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Year:  1992        PMID: 1542683      PMCID: PMC48552          DOI: 10.1073/pnas.89.5.1856

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

1.  A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae).

Authors:  R K Jansen; J D Palmer
Journal:  Proc Natl Acad Sci U S A       Date:  1987-08       Impact factor: 11.205

2.  Rearrangements in the chloroplast genomes of mung bean and pea.

Authors:  J D Palmer; W F Thompson
Journal:  Proc Natl Acad Sci U S A       Date:  1981-09       Impact factor: 11.205

3.  Chloroplast DNA evolution and systematics of Phanerophlebia (Dryopteridaceae) and related fern genera.

Authors:  G Yatskievych; D B Stein; G J Gastony
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

4.  The site of deletion of the inverted repeat in pea chloroplast DNA contains duplicated gene fragments.

Authors:  K H Wolfe
Journal:  Curr Genet       Date:  1988       Impact factor: 3.886

5.  Common features of three inversions in wheat chloroplast DNA.

Authors:  C J Howe; R F Barker; C M Bowman; T A Dyer
Journal:  Curr Genet       Date:  1988-04       Impact factor: 3.886

6.  Mutants of Chlamydomonas reinhardtii with physical alterations in their chloroplast DNA.

Authors:  A M Myers; D M Grant; D K Rabert; E H Harris; J E Boynton; N W Gillham
Journal:  Plasmid       Date:  1982-03       Impact factor: 3.466

7.  Duplication of the psbA gene in the chloroplast genome of two Pinus species.

Authors:  J Lidholm; A Szmidt; P Gustafsson
Journal:  Mol Gen Genet       Date:  1991-05

8.  The role of insertions/deletions in the evolution of the intergenic region between psbA and trnH in the chloroplast genome.

Authors:  J Aldrich; B W Cherney; E Merlin; L Christopherson
Journal:  Curr Genet       Date:  1988-08       Impact factor: 3.886

9.  Intramolecular recombination of chloroplast genome mediated by short direct-repeat sequences in wheat species.

Authors:  Y Ogihara; T Terachi; T Sasakuma
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

10.  Sequence analysis of the junction of the large single copy region and the large inverted repeat in the petunia chloroplast genome.

Authors:  J Aldrich; B W Cherney; C Williams; E Merlin
Journal:  Curr Genet       Date:  1988-11       Impact factor: 3.886

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  12 in total

1.  Plastid Genomes of Flowering Plants: Essential Principles.

Authors:  Tracey A Ruhlman; Robert K Jansen
Journal:  Methods Mol Biol       Date:  2021

2.  Plant mitochondrial nucleic acid sequences as a tool for phylogenetic analysis.

Authors:  R Hiesel; A von Haeseler; A Brennicke
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-18       Impact factor: 11.205

3.  rbcL gene sequences provide evidence for the evolutionary lineages of leptosporangiate ferns.

Authors:  M Hasebe; T Omori; M Nakazawa; T Sano; M Kato; K Iwatsuki
Journal:  Proc Natl Acad Sci U S A       Date:  1994-06-07       Impact factor: 11.205

4.  Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes.

Authors:  Rosemarie C Haberle; H Matthew Fourcade; Jeffrey L Boore; Robert K Jansen
Journal:  J Mol Evol       Date:  2008-03-11       Impact factor: 2.395

5.  Phylogenetic relationships of ferns deduced from rbcL gene sequence.

Authors:  M Hasebe; M Ito; R Kofuji; K Ueda; K Iwatsuki
Journal:  J Mol Evol       Date:  1993-11       Impact factor: 2.395

6.  Molecular evolution of psbA gene in ferns: unraveling selective pressure and co-evolutionary pattern.

Authors:  Lin Sen; Mario Fares; Ying-Juan Su; Ting Wang
Journal:  BMC Evol Biol       Date:  2012-08-16       Impact factor: 3.260

7.  The chloroplast genome from a lycophyte (microphyllophyte), Selaginella uncinata, has a unique inversion, transpositions and many gene losses.

Authors:  Sumika Tsuji; Kunihiko Ueda; Tomoaki Nishiyama; Mitsuyasu Hasebe; Sumi Yoshikawa; Akihiko Konagaya; Takumi Nishiuchi; Kazuo Yamaguchi
Journal:  J Plant Res       Date:  2007-02-13       Impact factor: 3.000

8.  The evolution of the plastid chromosome in land plants: gene content, gene order, gene function.

Authors:  Susann Wicke; Gerald M Schneeweiss; Claude W dePamphilis; Kai F Müller; Dietmar Quandt
Journal:  Plant Mol Biol       Date:  2011-03-22       Impact factor: 4.076

9.  Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes.

Authors:  Lei Gao; Xuan Yi; Yong-Xia Yang; Ying-Juan Su; Ting Wang
Journal:  BMC Evol Biol       Date:  2009-06-11       Impact factor: 3.260

10.  Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes.

Authors:  Mary E Cosner; Linda A Raubeson; Robert K Jansen
Journal:  BMC Evol Biol       Date:  2004-08-23       Impact factor: 3.260

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