Literature DB >> 15382234

Is allostery an intrinsic property of all dynamic proteins?

K Gunasekaran1, Buyong Ma, Ruth Nussinov.   

Abstract

Allostery involves coupling of conformational changes between two widely separated binding sites. The common view holds that allosteric proteins are symmetric oligomers, with each subunit existing in "at least" two conformational states with a different affinity for ligands. Recent observations such as the allosteric behavior of myoglobin, a classical example of a nonallosteric protein, call into question the existing allosteric dogma. Here we argue that all (nonfibrous) proteins are potentially allosteric. Allostery is a consequence of re-distributions of protein conformational ensembles. In a nonallosteric protein, the binding site shape may not show a concerted second-site change and enzyme kinetics may not reflect an allosteric transition. Nevertheless, appropriate ligands, point mutations, or external conditions may facilitate a population shift, leading a presumably nonallosteric protein to behave allosterically. In principle, practically any potential drug binding to the protein surface can alter the conformational redistribution. The question is its effectiveness in the redistribution of the ensemble, affecting the protein binding sites and its function. Here, we review experimental observations validating this view of protein allostery. (c) 2004 Wiley-Liss, Inc.

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Year:  2004        PMID: 15382234     DOI: 10.1002/prot.20232

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  322 in total

1.  Role of the conformational versatility of the neurotrophin N-terminal regions in their recognition by Trk receptors.

Authors:  Francesca Stanzione; Luciana Esposito; Antonella Paladino; Carlo Pedone; Giancarlo Morelli; Luigi Vitagliano
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

Review 2.  Allosteric regulation of protease activity by small molecules.

Authors:  Aimee Shen
Journal:  Mol Biosyst       Date:  2010-06-10

3.  Sequence signatures of allosteric proteins towards rational design.

Authors:  Saritha Namboodiri; Chandra Verma; Pawan K Dhar; Alessandro Giuliani; Achuthsankar S Nair
Journal:  Syst Synth Biol       Date:  2011-02-22

4.  Systematic control of protein interaction using a modular ER/K α-helix linker.

Authors:  Sivaraj Sivaramakrishnan; James A Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

Review 5.  What history tells us. XXVII. A new life for allostery.

Authors:  Michel Morange
Journal:  J Biosci       Date:  2012-03       Impact factor: 1.826

6.  Structure-based model of allostery predicts coupling between distant sites.

Authors:  Patrick Weinkam; Jaume Pons; Andrej Sali
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-08       Impact factor: 11.205

7.  Dynamical allosterism in the mechanism of action of DNA mismatch repair protein MutS.

Authors:  Susan N Pieniazek; Manju M Hingorani; D L Beveridge
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

8.  The two-pathway model of the biological catch-bond as a limit of the allosteric model.

Authors:  Yuriy V Pereverzev; Eugenia Prezhdo; Evgeni V Sokurenko
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

9.  Local and global anatomy of antibody-protein antigen recognition.

Authors:  Meryl Wang; David Zhu; Jianwei Zhu; Ruth Nussinov; Buyong Ma
Journal:  J Mol Recognit       Date:  2017-12-08       Impact factor: 2.137

10.  Structural basis for activation of fatty acid-binding protein 4.

Authors:  Richard E Gillilan; Stephen D Ayers; Noa Noy
Journal:  J Mol Biol       Date:  2007-08-02       Impact factor: 5.469

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