Literature DB >> 15381774

Colorimetric detection of DNA sequences based on electrostatic interactions with unmodified gold nanoparticles.

Huixiang Li1, Lewis Rothberg.   

Abstract

We find that single- and double-stranded oligonucleotides have different propensities to adsorb on gold nanoparticles in colloidal solution. We use this observation to design a hybridization assay based on color changes associated with gold aggregation. Because the underlying adsorption mechanism is electrostatic, no covalent functionalization of the gold, the probe, or the target DNA is required. Hybridization conditions can be optimized because it is completely separated from the detection step. The assay is complete within 5 min, and <100 femtomoles of target produces color changes observable without instrumentation. Single-base-pair mismatches are easily detected.

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Year:  2004        PMID: 15381774      PMCID: PMC521116          DOI: 10.1073/pnas.0406115101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

1.  Single-mismatch detection using gold-quenched fluorescent oligonucleotides.

Authors:  B Dubertret; M Calame; A J Libchaber
Journal:  Nat Biotechnol       Date:  2001-04       Impact factor: 54.908

2.  Thin film biosensor for rapid visual detection of nucleic acid targets.

Authors:  R M Ostroff; D Hopkins; A B Haeberli; W Baouchi; B Polisky
Journal:  Clin Chem       Date:  1999-09       Impact factor: 8.327

3.  Scanometric DNA array detection with nanoparticle probes.

Authors:  T A Taton; C A Mirkin; R L Letsinger
Journal:  Science       Date:  2000-09-08       Impact factor: 47.728

4.  Hybridization-based unquenching of DNA hairpins on au surfaces: prototypical "molecular beacon" biosensors.

Authors:  Hui Du; Matthew D Disney; Benjamin L Miller; Todd D Krauss
Journal:  J Am Chem Soc       Date:  2003-04-09       Impact factor: 15.419

5.  Rapid aggregation of gold nanoparticles induced by non-cross-linking DNA hybridization.

Authors:  Kae Sato; Kazuo Hosokawa; Mizuo Maeda
Journal:  J Am Chem Soc       Date:  2003-07-09       Impact factor: 15.419

6.  Identification of a novel coronavirus in patients with severe acute respiratory syndrome.

Authors:  Christian Drosten; Stephan Günther; Wolfgang Preiser; Sylvie van der Werf; Hans-Reinhard Brodt; Stephan Becker; Holger Rabenau; Marcus Panning; Larissa Kolesnikova; Ron A M Fouchier; Annemarie Berger; Ana-Maria Burguière; Jindrich Cinatl; Markus Eickmann; Nicolas Escriou; Klaus Grywna; Stefanie Kramme; Jean-Claude Manuguerra; Stefanie Müller; Volker Rickerts; Martin Stürmer; Simon Vieth; Hans-Dieter Klenk; Albert D M E Osterhaus; Herbert Schmitz; Hans Wilhelm Doerr
Journal:  N Engl J Med       Date:  2003-04-10       Impact factor: 91.245

7.  Label-free colorimetric detection of specific sequences in genomic DNA amplified by the polymerase chain reaction.

Authors:  Huixiang Li; Lewis J Rothberg
Journal:  J Am Chem Soc       Date:  2004-09-08       Impact factor: 15.419

8.  Predicting sequence-dependent melting stability of short duplex DNA oligomers.

Authors:  R Owczarzy; P M Vallone; F J Gallo; T M Paner; M J Lane; A S Benight
Journal:  Biopolymers       Date:  1997       Impact factor: 2.505

9.  Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles.

Authors:  R Elghanian; J J Storhoff; R C Mucic; R L Letsinger; C A Mirkin
Journal:  Science       Date:  1997-08-22       Impact factor: 47.728

10.  Nanoparticles with Raman spectroscopic fingerprints for DNA and RNA detection.

Authors:  YunWei Charles Cao; Rongchao Jin; Chad A Mirkin
Journal:  Science       Date:  2002-08-30       Impact factor: 47.728

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  147 in total

Review 1.  Plasmon-enhanced optical sensors: a review.

Authors:  Ming Li; Scott K Cushing; Nianqiang Wu
Journal:  Analyst       Date:  2015-01-21       Impact factor: 4.616

Review 2.  Gold nanoparticles in chemical and biological sensing.

Authors:  Krishnendu Saha; Sarit S Agasti; Chaekyu Kim; Xiaoning Li; Vincent M Rotello
Journal:  Chem Rev       Date:  2012-02-02       Impact factor: 60.622

3.  Colorimetric detection of DNA, small molecules, proteins, and ions using unmodified gold nanoparticles and conjugated polyelectrolytes.

Authors:  Fan Xia; Xiaolei Zuo; Renqiang Yang; Yi Xiao; Di Kang; Alexis Vallée-Bélisle; Xiong Gong; Jonathan D Yuen; Ben B Y Hsu; Alan J Heeger; Kevin W Plaxco
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

Review 4.  Molecular diagnostic and drug delivery agents based on aptamer-nanomaterial conjugates.

Authors:  Jung Heon Lee; Mehmet V Yigit; Debapriya Mazumdar; Yi Lu
Journal:  Adv Drug Deliv Rev       Date:  2010-03-22       Impact factor: 15.470

5.  Coupling molecular beacons to barcoded metal nanowires for multiplexed, sealed chamber DNA bioassays.

Authors:  Rebecca L Stoermer; Kristin B Cederquist; Sean K McFarland; Michael Y Sha; Sharron G Penn; Christine D Keating
Journal:  J Am Chem Soc       Date:  2006-12-27       Impact factor: 15.419

6.  Selective quenching of fluorescence from unbound oligonucleotides by gold nanoparticles as a probe of RNA structure.

Authors:  Huixiang Li; Ruiting Liang; Douglas H Turner; Lewis J Rothberg; Shenghua Duan
Journal:  RNA       Date:  2007-09-25       Impact factor: 4.942

Review 7.  Functional nucleic acid sensors.

Authors:  Juewen Liu; Zehui Cao; Yi Lu
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

Review 8.  Gold nanoparticles: From nanomedicine to nanosensing.

Authors:  Po C Chen; Sandra C Mwakwari; Adegboyega K Oyelere
Journal:  Nanotechnol Sci Appl       Date:  2008-11-02

9.  Gold nanoparticle-assisted single base-pair mismatch discrimination on a microfluidic microarray device.

Authors:  Lin Wang; Paul C H Li
Journal:  Biomicrofluidics       Date:  2010-09-30       Impact factor: 2.800

Review 10.  Cure of tuberculosis using nanotechnology: An overview.

Authors:  Rout George Kerry; Sushanto Gouda; Bikram Sil; Gitishree Das; Han-Seung Shin; Gajanan Ghodake; Jayanta Kumar Patra
Journal:  J Microbiol       Date:  2018-05-02       Impact factor: 3.422

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