Literature DB >> 1537560

A highly repetitive DNA sequence possibly unique to canids.

M F Minnick1, L C Stillwell, J M Heineman, G L Stiegler.   

Abstract

A short interspersed nucleotide (nt) element (SINE) was cloned from the genomic DNA of the domestic dog, Canis familiaris. Southern-blot analysis of canine DNA digested with four restriction endonucleases indicated that the SINE is widely dispersed throughout the genome. Hybridizations also indicated that the element may be unique to canids and is absent in a variety of other mammals, including members of four closely-related carnivore families. Three examples of the SINE have been located and sequenced. The 130-bp SINE contains putative RNA polymerase III transcriptional control sequences. The SINE is flanked at the 3' end by a (TC)8-repeat region followed by a poly(A) tract of 35-65 nt. Computer database searches located two homologous sequences with approx. 80% identity to the SINE. These sequences were located in untranslated regions of the canine genes encoding interferon-omega and clotting factor IX.

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Year:  1992        PMID: 1537560     DOI: 10.1016/0378-1119(92)90654-8

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  21 in total

1.  Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals.

Authors:  Li Yu; Ya-Ping Zhang
Journal:  Mamm Genome       Date:  2005-10-14       Impact factor: 2.957

Review 2.  Man's best friend becomes biology's best in show: genome analyses in the domestic dog.

Authors:  Heidi G Parker; Abigail L Shearin; Elaine A Ostrander
Journal:  Annu Rev Genet       Date:  2010       Impact factor: 16.830

3.  A method for generating subtractive cDNA libraries retaining clones containing repetitive elements.

Authors:  C T Lin; D R Sargan
Journal:  Nucleic Acids Res       Date:  1997-11-01       Impact factor: 16.971

4.  Molecular cloning and characterization of an antigenic protein with a repeating region from Clonorchis sinensis.

Authors:  T Y Kim; S Y Kang; I Y Ahn; S Y Cho; S J Hong
Journal:  Korean J Parasitol       Date:  2001-03       Impact factor: 1.341

Review 5.  Silencing transposable elements in the Drosophila germline.

Authors:  Fu Yang; Rongwen Xi
Journal:  Cell Mol Life Sci       Date:  2016-09-06       Impact factor: 9.261

6.  SINE elements of carnivores.

Authors:  H H van der Vlugt; J A Lenstra
Journal:  Mamm Genome       Date:  1995-01       Impact factor: 2.957

7.  Short interspersed elements (SINEs) are a major source of canine genomic diversity.

Authors:  Wei Wang; Ewen F Kirkness
Journal:  Genome Res       Date:  2005-12       Impact factor: 9.043

8.  Canine morphology: hunting for genes and tracking mutations.

Authors:  Abigail L Shearin; Elaine A Ostrander
Journal:  PLoS Biol       Date:  2010-03-02       Impact factor: 8.029

9.  Can SINEs: a family of tRNA-derived retroposons specific to the superfamily Canoidea.

Authors:  D W Coltman; J M Wright
Journal:  Nucleic Acids Res       Date:  1994-07-25       Impact factor: 16.971

10.  Organization and chromosomal location of repetitive DNA sequences in three species of squamate reptiles.

Authors:  C A Porter
Journal:  Chromosome Res       Date:  1994-07       Impact factor: 5.239

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