Literature DB >> 15366921

Carboxylate binding in copper histidine complexes in solution and in zeolite Y: X- and W-band pulsed EPR/ENDOR combined with DFT calculations.

Debbie Baute1, Dafna Arieli, Frank Neese, Herbert Zimmermann, Bert M Weckhuysen, Daniella Goldfarb.   

Abstract

The complexes of copper with histidine exhibit a wide variety of coordination modes in aqueous solution. This stems from the three potential coordination sites of the histidine molecule and the existence of mono- and bis-complexes. The present work concentrates on the determination of the carboxylate binding mode, via the (13)C hyperfine coupling of the carboxyl, in a number of copper complexes in frozen solutions. These are then used as references for the determination of the coordination mode of two zeolite encapsulated complexes. The (13)C hyperfine coupling (sign and magnitude) was determined by a variety of advanced pulsed EPR and electron-nuclear double resonance (ENDOR) techniques carried out at conventional and high magnetic fields. These showed that while the carboxyl (13)C isotropic hyperfine coupling of an equatorially coordinated carboxylate is negative with a magnitude of 3-4 MHz, that of a free carboxylate is small ( approximately 1 MHz) and positive. To rationalize the experimentally determined ligand hyperfine couplings ((1)H and (13)C) and further understand their dependence on the coordination mode and degree of protonation, density functional theory (DFT) calculations were carried out on a number of model complexes, representing the different Cu-histidine complexes studied experimentally. The exchange-correlation functional used for the calculation of the EPR parameters was B3LYP with triple-zeta plus polarization (TZP) quality basis sets. While the polarization agreement between the magnitudes of the calculated and experimental values varied among the various nuclei, sometimes exhibiting deviations of up to 40%, an excellent agreement was found for the sign prediction. This shows the unique advantage of combining high field ENDOR, by which the sign of the hyperfine can often be determined, with DFT predictions for structure determination.

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Year:  2004        PMID: 15366921     DOI: 10.1021/ja047761c

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

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2.  Aspects of structure and bonding in copper-amino acid complexes revealed by single-crystal EPR/ENDOR spectroscopy and density functional calculations.

Authors:  Michael J Colaneri; Jacqueline Vitali; Jack Peisach
Journal:  J Phys Chem A       Date:  2009-05-14       Impact factor: 2.781

3.  Copper(II)-bis-histidine coordination structure in a fibrillar amyloid β-peptide fragment and model complexes revealed by electron spin echo envelope modulation spectroscopy.

Authors:  Jessica Hernández-Guzmán; Li Sun; Anil K Mehta; Jijun Dong; David G Lynn; Kurt Warncke
Journal:  Chembiochem       Date:  2013-09-06       Impact factor: 3.164

4.  Calculating the geometry and Raman spectrum of physiological bis(L-histidinato)copper(II): an assessment of DFT functionals for aqueous and isolated systems.

Authors:  Jasmina Sabolović; Michael Ramek; Marijana Marković
Journal:  J Mol Model       Date:  2017-09-26       Impact factor: 1.810

5.  Spin delocalization over type zero copper.

Authors:  Alexey Potapov; Kyle M Lancaster; John H Richards; Harry B Gray; Daniella Goldfarb
Journal:  Inorg Chem       Date:  2012-03-20       Impact factor: 5.165

6.  Insights into copper coordination in the EcoRI-DNA complex by ESR spectroscopy.

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Journal:  Mol Phys       Date:  2014-12-01       Impact factor: 1.962

7.  Multireference ab initio calculations of g tensors for trinuclear copper clusters in multicopper oxidases.

Authors:  Steven Vancoillie; Jakub Chalupský; Ulf Ryde; Edward I Solomon; Kristine Pierloot; Frank Neese; Lubomír Rulísek
Journal:  J Phys Chem B       Date:  2010-06-10       Impact factor: 2.991

8.  Determination of copper(II) ion concentration by lifetime measurements of green fluorescent protein.

Authors:  Benjamin Hötzer; Rumen Ivanov; Silke Altmeier; Reinhard Kappl; Gregor Jung
Journal:  J Fluoresc       Date:  2011-07-20       Impact factor: 2.217

9.  Insight into the copper coordination environment in the prion protein through density functional theory calculations of EPR parameters.

Authors:  William M Ames; Sarah C Larsen
Journal:  J Biol Inorg Chem       Date:  2009-01-31       Impact factor: 3.358

10.  Cu-ZSM-5: A biomimetic inorganic model for methane oxidation.

Authors:  Pieter Vanelderen; Ryan G Hadt; Pieter J Smeets; Edward I Solomon; Robert A Schoonheydt; Bert F Sels
Journal:  J Catal       Date:  2011-11-14       Impact factor: 7.920

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