Literature DB >> 19378965

Aspects of structure and bonding in copper-amino acid complexes revealed by single-crystal EPR/ENDOR spectroscopy and density functional calculations.

Michael J Colaneri1, Jacqueline Vitali, Jack Peisach.   

Abstract

This work deduces from a series of well-defined n class="Chemical">copper-pan> class="Chemical">doped amino acid crystals, relationships between structural features of the copper complexes, and ligand-bound proton hyperfine parameters. These were established by combining results from electron paramagnetic resonance (EPR)/electron-nuclear double resonance (ENDOR) studies, crystallography, and were further assessed by quantum mechanical (QM) calculations. A detailed evaluation of previous studies on Cu(2+) doped into alpha-glycine, triglycine sulfate, alpha-glycylglycine, and L-alanine crystals reveal correlations between geometric features of the copper sites and proton hyperfine couplings from amino-bound and carbon-bound hydrogens. Experimental variations in proton isotropic hyperfine coupling values (a(iso)) could be fit to cosine-square dependences on dihedral angles, namely, for C(alpha)-bound hydrogens, a(iso) = -1.09 + 8.21 cos(2) theta MHz, and for amino hydrogens, a(iso) = -6.16 + 4.15 cos(2) phi MHz. For the C(alpha) hydrogens, this dependency suggests a hyperconjugative-like mechanism for transfer of spin density into the hydrogen 1s orbital. In the course of this work, it was also necessary to reanalyze the ENDOR measurements from Cu(2+)-doped alpha-glycine because the initial study determined the (14)N coupling parameters without holding its nuclear quadrupole tensor traceless. This new treatment of the data was needed to correctly align the (14)N hyperfine tensor principal directions in the molecular complex. To provide a theoretical basis for the coupling variations, QM calculations performed at the DFT level were used to compute the proton hyperfine tensors in the four crystal complexes as well as in a geometry-optimized Cu(2+)(glycine)(2) model. These theoretical calculations confirmed systematic changes in couplings with dihedral angles but greatly overestimated the experimental geometric sensitivity to the amino hydrogen isotropic coupling.

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Year:  2009        PMID: 19378965      PMCID: PMC2896622          DOI: 10.1021/jp811249s

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  14 in total

1.  Geometry of interaction of metal ions with histidine residues in protein structures.

Authors:  P Chakrabarti
Journal:  Protein Eng       Date:  1990-10

2.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

3.  Molecular features of the copper binding sites in the octarepeat domain of the prion protein.

Authors:  Colin S Burns; Eliah Aronoff-Spencer; Christine M Dunham; Paula Lario; Nikolai I Avdievich; William E Antholine; Marilyn M Olmstead; Alice Vrielink; Gary J Gerfen; Jack Peisach; William G Scott; Glenn L Millhauser
Journal:  Biochemistry       Date:  2002-03-26       Impact factor: 3.162

4.  Structural implications derived from the analysis of electron paramagnetic resonance spectra of natural and artificial copper proteins.

Authors:  J Peisach; W E Blumberg
Journal:  Arch Biochem Biophys       Date:  1974-12       Impact factor: 4.013

5.  Precision neutron diffraction structure determination of protein and nucleic acid components. I. The crystal and molecular structure of the amino acid L-alanine.

Authors:  M S Lehmann; T F Koetzle; W C Hamilton
Journal:  J Am Chem Soc       Date:  1972-04-19       Impact factor: 15.419

6.  The octarepeat domain of the prion protein binds Cu(II) with three distinct coordination modes at pH 7.4.

Authors:  Madhuri Chattopadhyay; Eric D Walter; Dustin J Newell; Pilgrim J Jackson; Eliah Aronoff-Spencer; Jack Peisach; Gary J Gerfen; Brian Bennett; William E Antholine; Glenn L Millhauser
Journal:  J Am Chem Soc       Date:  2005-09-14       Impact factor: 15.419

7.  Structure of copper(II)-histidine based complexes in frozen aqueous solutions as determined from high-field pulsed electron nuclear double resonance.

Authors:  P Manikandan; B Epel; D Goldfarb
Journal:  Inorg Chem       Date:  2001-02-12       Impact factor: 5.165

8.  Copper binding sites in the C-terminal domain of mouse prion protein: A hybrid (QM/MM) molecular dynamics study.

Authors:  Maria Carola Colombo; Joost Vandevondele; Sabine Van Doorslaer; Alessandro Laio; Leonardo Guidoni; Ursula Rothlisberger
Journal:  Proteins       Date:  2008-02-15

9.  Copper coordination in the full-length, recombinant prion protein.

Authors:  Colin S Burns; Eliah Aronoff-Spencer; Giuseppe Legname; Stanley B Prusiner; William E Antholine; Gary J Gerfen; Jack Peisach; Glenn L Millhauser
Journal:  Biochemistry       Date:  2003-06-10       Impact factor: 3.162

10.  Carboxylate binding in copper histidine complexes in solution and in zeolite Y: X- and W-band pulsed EPR/ENDOR combined with DFT calculations.

Authors:  Debbie Baute; Dafna Arieli; Frank Neese; Herbert Zimmermann; Bert M Weckhuysen; Daniella Goldfarb
Journal:  J Am Chem Soc       Date:  2004-09-22       Impact factor: 15.419

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  2 in total

1.  Electron paramagnetic resonance spectroscopic study of copper hopping in doped bis(L-histidinato)cadmium dihydrate.

Authors:  Michael J Colaneri; Jacqueline Vitali; Kristin Kirschbaum
Journal:  J Phys Chem A       Date:  2013-04-12       Impact factor: 2.781

2.  Detection of Copper(II) Ions Using Glycine on Hydrazine-Adsorbed Gold Nanoparticles via Raman Spectroscopy.

Authors:  Nguyễn Hoàng Ly; Chulhun Seo; Sang-Woo Joo
Journal:  Sensors (Basel)       Date:  2016-10-26       Impact factor: 3.576

  2 in total

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