Literature DB >> 15364960

Mathematical modeling reveals threshold mechanism in CD95-induced apoptosis.

M Bentele1, I Lavrik, M Ulrich, S Stösser, D W Heermann, H Kalthoff, P H Krammer, R Eils.   

Abstract

Mathematical modeling is required for understanding the complex behavior of large signal transduction networks. Previous attempts to model signal transduction pathways were often limited to small systems or based on qualitative data only. Here, we developed a mathematical modeling framework for understanding the complex signaling behavior of CD95(APO-1/Fas)-mediated apoptosis. Defects in the regulation of apoptosis result in serious diseases such as cancer, autoimmunity, and neurodegeneration. During the last decade many of the molecular mechanisms of apoptosis signaling have been examined and elucidated. A systemic understanding of apoptosis is, however, still missing. To address the complexity of apoptotic signaling we subdivided this system into subsystems of different information qualities. A new approach for sensitivity analysis within the mathematical model was key for the identification of critical system parameters and two essential system properties: modularity and robustness. Our model describes the regulation of apoptosis on a systems level and resolves the important question of a threshold mechanism for the regulation of apoptosis.

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Year:  2004        PMID: 15364960      PMCID: PMC2172102          DOI: 10.1083/jcb.200404158

Source DB:  PubMed          Journal:  J Cell Biol        ISSN: 0021-9525            Impact factor:   10.539


  30 in total

1.  Cell signaling pathways as control modules: complexity for simplicity?

Authors:  D A Lauffenburger
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

2.  A mathematical model of caspase function in apoptosis.

Authors:  M Fussenegger; J E Bailey; J Varner
Journal:  Nat Biotechnol       Date:  2000-07       Impact factor: 54.908

3.  Complexity and robustness.

Authors:  J M Carlson; John Doyle
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

Review 4.  Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era.

Authors:  C H Schilling; S Schuster; B O Palsson; R Heinrich
Journal:  Biotechnol Prog       Date:  1999 May-Jun

5.  Overview of the Alliance for Cellular Signaling.

Authors:  Alfred G Gilman; Melvin I Simon; Henry R Bourne; Bruce A Harris; Rochelle Long; Elliott M Ross; James T Stull; Ronald Taussig; Henry R Bourne; Adam P Arkin; Melanie H Cobb; Jason G Cyster; Peter N Devreotes; James E Ferrell; David Fruman; Michael Gold; Arthur Weiss; James T Stull; Michael J Berridge; Lewis C Cantley; William A Catterall; Shaun R Coughlin; Eric N Olson; Temple F Smith; Joan S Brugge; David Botstein; Jack E Dixon; Tony Hunter; Robert J Lefkowitz; Anthony J Pawson; Paul W Sternberg; Harold Varmus; Shankar Subramaniam; Robert S Sinkovits; Joshua Li; Dennis Mock; Yuhong Ning; Brian Saunders; Paul C Sternweis; Donald Hilgemann; Richard H Scheuermann; Dianne DeCamp; Robert Hsueh; Keng-Mean Lin; Yan Ni; William E Seaman; Paul C Simpson; Timothy D O'Connell; Tamara Roach; Melvin I Simon; Sangdun Choi; Pamela Eversole-Cire; Iain Fraser; Marc C Mumby; Yingming Zhao; Deirdre Brekken; Hongjun Shu; Tobias Meyer; Grischa Chandy; Won Do Heo; Jen Liou; Nancy O'Rourke; Mary Verghese; Susanne M Mumby; Heping Han; H Alex Brown; Jeffrey S Forrester; Pavlina Ivanova; Stephen B Milne; Patrick J Casey; T Kendall Harden; Adam P Arkin; John Doyle; Martha L Gray; Tobias Meyer; Stephen Michnick; Martin A Schmidt; Mehmet Toner; Roger Y Tsien; Madhusudan Natarajan; Rama Ranganathan; Gilberto R Sambrano
Journal:  Nature       Date:  2002-12-12       Impact factor: 49.962

6.  Cellular FLICE-inhibitory protein splice variants inhibit different steps of caspase-8 activation at the CD95 death-inducing signaling complex.

Authors:  A Krueger; I Schmitz; S Baumann; P H Krammer; S Kirchhoff
Journal:  J Biol Chem       Date:  2001-03-05       Impact factor: 5.157

7.  The active caspase-8 heterotetramer is formed at the CD95 DISC.

Authors:  I Lavrik; A Krueger; I Schmitz; S Baumann; H Weyd; P H Krammer; S Kirchhoff
Journal:  Cell Death Differ       Date:  2003-01       Impact factor: 15.828

8.  Direct inhibition of caspase 3 is dispensable for the anti-apoptotic activity of XIAP.

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Journal:  EMBO J       Date:  2001-06-15       Impact factor: 11.598

Review 9.  Cellular FLICE-inhibitory protein: an attractive therapeutic target?

Authors:  Olivier Micheau
Journal:  Expert Opin Ther Targets       Date:  2003-08       Impact factor: 6.902

Review 10.  The CD95(APO-1/Fas) DISC and beyond.

Authors:  M E Peter; P H Krammer
Journal:  Cell Death Differ       Date:  2003-01       Impact factor: 15.828

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  116 in total

Review 1.  Regulation of CD95/Fas signaling at the DISC.

Authors:  I N Lavrik; P H Krammer
Journal:  Cell Death Differ       Date:  2011-11-11       Impact factor: 15.828

2.  Proteasome inhibition can impair caspase-8 activation upon submaximal stimulation of apoptotic tumor necrosis factor-related apoptosis inducing ligand (TRAIL) signaling.

Authors:  Maike A Laussmann; Egle Passante; Christian T Hellwig; Bartlomiej Tomiczek; Lorna Flanagan; Jochen H M Prehn; Heinrich J Huber; Markus Rehm
Journal:  J Biol Chem       Date:  2012-03-09       Impact factor: 5.157

3.  Signaling active CD95 receptor molecules trigger co-translocation of inactive CD95 molecules into lipid rafts.

Authors:  Isabell Lang; Andrea Fick; Viktoria Schäfer; Tina Giner; Daniela Siegmund; Harald Wajant
Journal:  J Biol Chem       Date:  2012-05-29       Impact factor: 5.157

4.  Impaired Akt activity down-modulation, caspase-3 activation, and apoptosis in cells expressing a caspase-resistant mutant of RasGAP at position 157.

Authors:  Jiang-Yan Yang; Joël Walicki; David Michod; Gilles Dubuis; Christian Widmann
Journal:  Mol Biol Cell       Date:  2005-05-18       Impact factor: 4.138

5.  Integrated mechanistic and data-driven modelling for multivariate analysis of signalling pathways.

Authors:  Fei Hua; Sampsa Hautaniemi; Rayka Yokoo; Douglas A Lauffenburger
Journal:  J R Soc Interface       Date:  2006-08-22       Impact factor: 4.118

6.  A rate equation approach to elucidate the kinetics and robustness of the TGF-beta pathway.

Authors:  Pontus Melke; Henrik Jönsson; Evangelia Pardali; Peter ten Dijke; Carsten Peterson
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

7.  Modeling of the role of a Bax-activation switch in the mitochondrial apoptosis decision.

Authors:  Chun Chen; Jun Cui; Haizhu Lu; Rui Wang; Shuai Zhang; Pingping Shen
Journal:  Biophys J       Date:  2007-03-30       Impact factor: 4.033

8.  Evidence-based modeling of critical illness: an initial consensus from the Society for Complexity in Acute Illness.

Authors:  Yoram Vodovotz; Gilles Clermont; C Anthony Hunt; Rolf Lefering; John Bartels; Ruediger Seydel; John Hotchkiss; Shlomo Ta'asan; Edmund Neugebauer; Gary An
Journal:  J Crit Care       Date:  2007-03       Impact factor: 3.425

9.  Systems analysis of cancer cell heterogeneity in caspase-dependent apoptosis subsequent to mitochondrial outer membrane permeabilization.

Authors:  Jasmin Schmid; Heiko Dussmann; Gerhardt J Boukes; Lorna Flanagan; Andreas U Lindner; Carla L O'Connor; Markus Rehm; Jochen H M Prehn; Heinrich J Huber
Journal:  J Biol Chem       Date:  2012-10-04       Impact factor: 5.157

10.  Higher-order assemblies in a new paradigm of signal transduction.

Authors:  Hao Wu
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

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