Literature DB >> 15356336

Stable isotope labeling of Arabidopsis thaliana for an NMR-based metabolomics approach.

Jun Kikuchi1, Kazuo Shinozaki, Takashi Hirayama.   

Abstract

Nuclear magnetic resonance (NMR) will become a key technology in plant metabolomics with the use of stable isotope labeling and advanced hetero-nuclear NMR methodologies. To demonstrate the power of this approach, we performed multi-dimensional hetero-nuclear NMR analysis of metabolic movement of carbon and nitrogen nuclei in Arabidopsis thaliana. First, distinct ethanol-stress response was investigated using (13)C-labeled wild type and an ethanol-hypersensitive mutant plants. Furthermore, we followed nitrogen fluxes in (15)N-labeled seeds during the initiation of germination in vivo. The future role of stable isotope-labeling combined with advanced hetero-nuclear NMR in plant metabolomics is discussed.

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Year:  2004        PMID: 15356336     DOI: 10.1093/pcp/pch117

Source DB:  PubMed          Journal:  Plant Cell Physiol        ISSN: 0032-0781            Impact factor:   4.927


  36 in total

1.  Bifidobacteria can protect from enteropathogenic infection through production of acetate.

Authors:  Shinji Fukuda; Hidehiro Toh; Koji Hase; Kenshiro Oshima; Yumiko Nakanishi; Kazutoshi Yoshimura; Toru Tobe; Julie M Clarke; David L Topping; Tohru Suzuki; Todd D Taylor; Kikuji Itoh; Jun Kikuchi; Hidetoshi Morita; Masahira Hattori; Hiroshi Ohno
Journal:  Nature       Date:  2011-01-27       Impact factor: 49.962

2.  Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells.

Authors:  Yukihiro Furusawa; Yuuki Obata; Shinji Fukuda; Takaho A Endo; Gaku Nakato; Daisuke Takahashi; Yumiko Nakanishi; Chikako Uetake; Keiko Kato; Tamotsu Kato; Masumi Takahashi; Noriko N Fukuda; Shinnosuke Murakami; Eiji Miyauchi; Shingo Hino; Koji Atarashi; Satoshi Onawa; Yumiko Fujimura; Trevor Lockett; Julie M Clarke; David L Topping; Masaru Tomita; Shohei Hori; Osamu Ohara; Tatsuya Morita; Haruhiko Koseki; Jun Kikuchi; Kenya Honda; Koji Hase; Hiroshi Ohno
Journal:  Nature       Date:  2013-11-13       Impact factor: 49.962

Review 3.  Genomics and bioinformatics resources for crop improvement.

Authors:  Keiichi Mochida; Kazuo Shinozaki
Journal:  Plant Cell Physiol       Date:  2010-03-05       Impact factor: 4.927

4.  Metabolomics as an Emerging Tool in the Search for Astrobiologically Relevant Biomarkers.

Authors:  Lauren Seyler; Elizabeth B Kujawinski; Armando Azua-Bustos; Michael D Lee; Jeffrey Marlow; Scott M Perl; Henderson James Cleaves Ii
Journal:  Astrobiology       Date:  2020-06-17       Impact factor: 4.335

5.  Overexpression of AtWRKY50 is correlated with enhanced production of sinapic derivatives in Arabidopsis.

Authors:  Rana M F Hussain; Hye K Kim; Muhammad Khurshid; Muhammad T Akhtar; Huub J M Linthorst
Journal:  Metabolomics       Date:  2018-01-31       Impact factor: 4.290

6.  Method for determining molar concentrations of metabolites in complex solutions from two-dimensional 1H-13C NMR spectra.

Authors:  Ian A Lewis; Seth C Schommer; Brendan Hodis; Kate A Robb; Marco Tonelli; William M Westler; Michael R Sussman; John L Markley
Journal:  Anal Chem       Date:  2007-11-07       Impact factor: 6.986

Review 7.  Isotope enhanced approaches in metabolomics.

Authors:  G A Nagana Gowda; Narasimhamurthy Shanaiah; Daniel Raftery
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

Review 8.  LC-MS-based metabolomics in drug metabolism.

Authors:  Chi Chen; Frank J Gonzalez; Jeffrey R Idle
Journal:  Drug Metab Rev       Date:  2007       Impact factor: 4.518

9.  Resolving the role of plant glutamate dehydrogenase. I. In vivo real time nuclear magnetic resonance spectroscopy experiments.

Authors:  Soraya Labboun; Thérèse Tercé-Laforgue; Albrecht Roscher; Magali Bedu; Francesco M Restivo; Christos N Velanis; Damianos S Skopelitis; Panagiotis N Moschou; Panagiotis N Moshou; Kalliopi A Roubelakis-Angelakis; Akira Suzuki; Bertrand Hirel
Journal:  Plant Cell Physiol       Date:  2009-08-18       Impact factor: 4.927

10.  Evaluation and characterization of bacterial metabolic dynamics with a novel profiling technique, real-time metabolotyping.

Authors:  Shinji Fukuda; Yumiko Nakanishi; Eisuke Chikayama; Hiroshi Ohno; Tsuneo Hino; Jun Kikuchi
Journal:  PLoS One       Date:  2009-03-16       Impact factor: 3.240

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