Literature DB >> 15347811

Fast folding of a helical protein initiated by the collision of unstructured chains.

W Kevin Meisner1, Tobin R Sosnick.   

Abstract

To examine whether helix formation necessarily precedes chain collision, we have measured the folding of a fully helical coiled coil that has been specially engineered to have negligible intrinsic helical propensity but high overall stability. The folding rate approaches the diffusion-limited value and is much faster than possible if folding is contingent on precollision helix formation. Therefore, the collision of two unstructured chains is the initial step of the dominant kinetic pathway, whereas helicity exerts its influence only at a later step. Folding from an unstructured encounter complex may be efficient and robust, which has implications for any biological process that couples folding to binding.

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Year:  2004        PMID: 15347811      PMCID: PMC518782          DOI: 10.1073/pnas.0404057101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Energetics of coiled coil folding: the nature of the transition states.

Authors:  H R Bosshard; E Dürr; T Hitz; I Jelesarov
Journal:  Biochemistry       Date:  2001-03-27       Impact factor: 3.162

2.  Transition state heterogeneity in GCN4 coiled coil folding studied by using multisite mutations and crosslinking.

Authors:  L B Moran; J P Schneider; A Kentsis; G A Reddy; T R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

3.  Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques.

Authors:  D K Wilkins; S B Grimshaw; V Receveur; C M Dobson; J A Jones; L J Smith
Journal:  Biochemistry       Date:  1999-12-14       Impact factor: 3.162

4.  Preformed secondary structure drives the association reaction of GCN4-p1, a model coiled-coil system.

Authors:  J A Zitzewitz; B Ibarra-Molero; D R Fishel; K L Terry; C R Matthews
Journal:  J Mol Biol       Date:  2000-03-03       Impact factor: 5.469

5.  Mapping the energy surface for the folding reaction of the coiled-coil peptide GCN4-p1.

Authors:  B Ibarra-Molero; G I Makhatadze; C R Matthews
Journal:  Biochemistry       Date:  2001-01-23       Impact factor: 3.162

6.  Stabilisation of alpha-helices by site-directed mutagenesis reveals the importance of secondary structure in the transition state for acylphosphatase folding.

Authors:  N Taddei; F Chiti; T Fiaschi; M Bucciantini; C Capanni; M Stefani; L Serrano; C M Dobson; G Ramponi
Journal:  J Mol Biol       Date:  2000-07-14       Impact factor: 5.469

7.  Speeding molecular recognition by using the folding funnel: the fly-casting mechanism.

Authors:  B A Shoemaker; J J Portman; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

8.  Engineered metal binding sites map the heterogeneous folding landscape of a coiled coil.

Authors:  B A Krantz; T R Sosnick
Journal:  Nat Struct Biol       Date:  2001-12

9.  Preorganized secondary structure as an important determinant of fast protein folding.

Authors:  J K Myers; T G Oas
Journal:  Nat Struct Biol       Date:  2001-06

10.  Evidence for partial secondary structure formation in the transition state for arc repressor refolding and dimerization.

Authors:  A K Srivastava; R T Sauer
Journal:  Biochemistry       Date:  2000-07-18       Impact factor: 3.162

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  21 in total

1.  Structural basis of RNA binding by leucine zipper GCN4.

Authors:  Yaroslav Nikolaev; Konstantin Pervushin
Journal:  Protein Sci       Date:  2012-03-29       Impact factor: 6.725

2.  The effects of pK(a) tuning on the thermodynamics and kinetics of folding: design of a solvent-shielded carboxylate pair at the a-position of a coiled-coil.

Authors:  Wai Leung Lau; William F Degrado; Heinrich Roder
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

3.  Molecular basis of coiled-coil formation.

Authors:  Michel O Steinmetz; Ilian Jelesarov; William M Matousek; Srinivas Honnappa; Wolfgang Jahnke; John H Missimer; Sabine Frank; Andrei T Alexandrescu; Richard A Kammerer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-16       Impact factor: 11.205

4.  Conformational dynamics is more important than helical propensity for the folding of the all α-helical protein Im7.

Authors:  Angelo Miguel Figueiredo; Sara B-M Whittaker; Stuart E Knowling; Sheena E Radford; Geoffrey R Moore
Journal:  Protein Sci       Date:  2013-10-19       Impact factor: 6.725

Review 5.  The loop hypothesis: contribution of early formed specific non-local interactions to the determination of protein folding pathways.

Authors:  Tomer Orevi; Gil Rahamim; Gershon Hazan; Dan Amir; Elisha Haas
Journal:  Biophys Rev       Date:  2013-04-12

6.  Slow, reversible, coupled folding and binding of the spectrin tetramerization domain.

Authors:  S L Shammas; J M Rogers; S A Hill; J Clarke
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

7.  Sequence-resolved free energy profiles of stress-bearing vimentin intermediate filaments.

Authors:  Beatrice Ramm; Johannes Stigler; Michael Hinczewski; D Thirumalai; Harald Herrmann; Günther Woehlke; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-21       Impact factor: 11.205

8.  Flexibility vs Preorganization: Direct Comparison of Binding Kinetics for a Disordered Peptide and Its Exact Preorganized Analogues.

Authors:  A S Saglam; D W Wang; M C Zwier; L T Chong
Journal:  J Phys Chem B       Date:  2017-10-20       Impact factor: 2.991

9.  Temperature and chemical denaturant dependence of forced unfolding of titin I27.

Authors:  Eric Botello; Nolan C Harris; Jacob Sargent; Wei-Hung Chen; Kuan-Jiuh Lin; Ching-Hwa Kiang
Journal:  J Phys Chem B       Date:  2009-08-06       Impact factor: 2.991

10.  Molecular dynamics guided study of salt bridge length dependence in both fluorinated and non-fluorinated parallel dimeric coiled-coils.

Authors:  Scott S Pendley; Yihua B Yu; Thomas E Cheatham
Journal:  Proteins       Date:  2009-02-15
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